Genewise 

Find start end points: [25,1001][83,1160] Score 10351
Recovering alignment: Alignment recoveredExplicit read offone 88%

genewise output
Score 29.87 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Information
	Name gi|70884537|gb|AAHK01000101.1|:subseq(28171,10000) is longer
than allowed name block (15). Truncating

SPP00000043_1.0   26 SMIYIEHTYECPIFQTKADECGTFFTQRIPERKFQLVKNRNGRQVPREG 
                     +++ + +  ECP ++T+    G F+T R   R ++  + R G   PR+  
                     AQLLVRYHCECPTMRTRRQ--GVFYTTRCKSRPIRFAQGRGGFLPPRQ- 
gi|70884537|gb| 1000 gcccgatctgtcaacaccc  ggttaaataaacactgcgaggtcccac  
                     catttgaagagcctgcgga  gttaccggaggctgtcaggggttccga  
                     tggcaacccatacggggga  agtcaggtacgacctggcatttcgggg  


SPP00000043_1.0   75 AFEIGFSQNA                                        
                        +G+S+NA                                        
                     --RVGYSRNA                                        
gi|70884537|gb| 1138   cggttcag                                        
                       gtgacgac                                        
                       ttctggtc                                        


//
>gi|70884537|gb|AAHK01000101.1|:subseq(28171,10000).pep
AQLLVRYHCECPTMRTRRQGVFYTTRCKSRPIRFAQGRGGFLPPRQRVGYSRNA
//
>gi|70884537|gb|AAHK01000101.1|:subseq(28171,10000).[1000:1161].sp
GCTCAGCTGCTCGTAAGATACCACTGCGAATGTCCAACCATGCGGACGCGGCGGCAAGGA
GTGTTTTACACAACGAGGTGTAAAAGCAGGCCAATCCGCTTTGCGCAGGGCAGAGGTGGT
TTTCTCCCGCCGAGGCAGCGTGTTGGCTATTCGCGGAATGCC
//
gi|70884537|gb|AAHK01000101.1|:subseq(28171,10000)	GeneWise	match	1000	1161	32.86	+	.	gi|70884537|gb|AAHK01000101.1|:subseq(28171,10000)-genewise-prediction-1
gi|70884537|gb|AAHK01000101.1|:subseq(28171,10000)	GeneWise	cds	1000	1161	0.00	+	0	gi|70884537|gb|AAHK01000101.1|:subseq(28171,10000)-genewise-prediction-1
//

