Command line: [exonerate -m p2g --showtargetgff -q query_Chlamydomonas_reinhardtii_MsrA.senseU.fa -t chlamydomonasMsrACONTRA2010Phytophthora_ramorum.senseU.fastasubseq.e25.fa]
Hostname: [ws101168.aulescm.upf.edu]

C4 Alignment:
------------
         Query: gi|23452038|gb|AAN32904.1| methionine-S-sulfoxide reductase MsrA1 [Chlamydomonas reinhardtii] 
        Target: gi|113920983|gb|AAQX01000186.1|:subseq(9100,1200) Phytophthora ramorum strain Pr102 Pramorum_Cont186, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 191
   Query range: 11 -> 104
  Target range: 54 -> 336

  12 : GluLeuAlaThrPheAlaLeuGlyUnkPheTrpHisProGluAlaSerPheAlaAsnValProG :  33
       ...:!!|||..!||||||  !|||   ||||||  !  !:!!  !:!!|||! !..!|||||||
       SerValAlaValPheAlaAlaGlyCysPheTrpGlyValGlnArgAlaPheAspArgValProG
  55 : AGCGTCGCCGTTTTCGCCGCTGGCTGCTTCTGGGGCGTGCAGCGCGCCTTCGACCGCGTGCCGG : 118

  34 : lyValValLysThrArgValGlyTyrThrGlyGlySerArgProAsnProThrTyrGluSerVa :  54
       |||||:!!:!!|||! !|||||||||:!!  !|||!.!! !  !||||||||||||:!!!!!||
       lyValIleGluThrThrValGlyTyrSerGlnGlyLysThrAspAsnProThrTyrLysThrVa
 119 : GCGTGATTGAGACGACGGTGGGCTACTCGCAAGGAAAGACCGACAATCCAACGTACAAGACGGT : 181

  55 : lCysAlaGly<->AspGlyHisThrGluAlaMetArgValTrpPheAspProAlaIleIleSer :  74
       |  !.!!|||      ..!|||.!!|||:!!!!:!:!:!!   |||:!! !!::!   :!:|||
       lValThrGlyArgThrAsnHisAlaGluSerIleLysIleValPheAsnAlaSerGlnValSer
 182 : GGTCACGGGACGTACGAACCACGCCGAGTCCATCAAGATCGTCTTCAATGCGAGTCAGGTGTCC : 244

  75 : TyrGluAspLeuLeuLysGlnPhePheArgGluHisAspProThrGlnLysSerLysCysGlnT :  96
       |||!!:||||||||||||  !|||!::! !   ||||||||||||..!   !:!:::   :!! 
       TyrAspAspLeuLeuLysValPheTrpThrIleHisAspProThrSerLeuAsnArgGlnGluG
 245 : TACGACGATCTTCTCAAGGTGTTCTGGACCATCCACGACCCCACGTCGCTCAACCGCCAGGAGG : 310

  97 : yrLysSerAlaValTrpTyrHisSer : 104
       !  ! !!!!.!..!  !|||!.!|||
       luAspArgGlyThrGlnTyrArgSer
 311 : AGGACAGGGGCACGCAGTACCGCTCA : 336

vulgar: gi|23452038|gb|AAN32904.1| 11 104 . gi|113920983|gb|AAQX01000186.1|:subseq(9100,1200) 54 336 + 191 M 46 138 G 0 3 M 47 141
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|113920983|gb|AAQX01000186.1|:subseq(9100,1200)	exonerate:protein2genome:local	gene	55	336	191	+	.	gene_id 1 ; sequence gi|23452038|gb|AAN32904.1| ; gene_orientation .
gi|113920983|gb|AAQX01000186.1|:subseq(9100,1200)	exonerate:protein2genome:local	cds	55	336	.	+	.	
gi|113920983|gb|AAQX01000186.1|:subseq(9100,1200)	exonerate:protein2genome:local	exon	55	336	.	+	.	insertions 3 ; deletions 0
gi|113920983|gb|AAQX01000186.1|:subseq(9100,1200)	exonerate:protein2genome:local	similarity	55	336	191	+	.	alignment_id 1 ; Query gi|23452038|gb|AAN32904.1| ; Align 55 12 138 ; Align 196 58 141
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
