TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23452038|gb|AAN32904.1| methionine-S-sulfoxide reductase
MsrA1 [Chlamydomonas reinhardtii] 
         (160 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01005342.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    64   1e-10
gb|AAXJ01000112.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    62   4e-10
gb|AAXJ01001103.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    32   0.33 
gb|AAXJ01000474.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    30   1.7  
gb|AAXJ01006466.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   2.8  
gb|AAXJ01000513.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   2.8  
gb|AAXJ01000255.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   2.8  
gb|AAXJ01000624.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   4.8  
gb|AAXJ01000009.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   4.8  
gb|AAXJ01003735.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   6.3  
gb|AAXJ01001327.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   6.3  
gb|AAXJ01000704.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   6.3  
gb|AAXJ01002198.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    28   8.2  

>gb|AAXJ01005342.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296309956,
            whole genome shotgun sequence
          Length = 2780

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 59/167 (35%)
 Frame = -1

Query: 39   VGYTGGSRPNPTYESVCAGD-GHTEAMRVWFDPAIISYEDLL----------------KQ 81
            VGY  G  PNPTYE VC+G   H+E +R+ ++P  I+Y+DLL                K 
Sbjct: 2024 VGYAQGKTPNPTYEEVCSGQTNHSEVVRIIYNPKTITYKDLLKVTHRSLRSSSMMMYRKV 1845

Query: 82   FFREHDPT----QKSKC----------------------------QYKSAVWYHSEAHGT 109
            F+  HDPT    Q + C                              ++  W  SE    
Sbjct: 1844 FWSGHDPTVPMAQGNDCGSQ*VHMAGRWSSPSWSGIGVVYIIIMRSRRARHWRASERVNN 1665

Query: 110  ALAAVMKELEGKYRVRLA----------TTVDPAGDWWDAEEYHQKY 146
            +  ++      +Y+  L+          T ++PAG+++ AE+YHQ+Y
Sbjct: 1664 SSVSIFSSFREEYQAALSKAGMKEKTIVTEIEPAGEFYYAEDYHQQY 1524


>gb|AAXJ01000112.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296679972,
             whole genome shotgun sequence
          Length = 64280

 Score = 62.0 bits (149), Expect = 4e-10
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 58/166 (34%)
 Frame = -1

Query: 39    VGYTGGSRPNPTYESVCAGD-GHTEAMRVWFDPAIISYEDLL----------------KQ 81
             VGY  G  PNPTYE VC+G   H+E +R+ ++P  I+Y+DLL                K 
Sbjct: 17582 VGYAQGKTPNPTYEEVCSGQTNHSEVVRIIYNPKTITYKDLLKVTHSSLRSSSMMMYSKV 17403

Query: 82    FFREHDPT----QKSKC----------------------------QYKSAVWYHSEAHGT 109
             F+  HDPT    Q + C                              ++  W  SE    
Sbjct: 17402 FWSGHDPTVPMAQGNDCGSQ*VHMAGRWSSPSWSGIGVVYIIIMRSRRARHWRASERVND 17223

Query: 110   ALAAVMKELEGKYRVRLA---------TTVDPAGDWWDAEEYHQKY 146
             +  +       +Y+  L+         T ++PAG+++ AE+YHQ+Y
Sbjct: 17222 SSVSSFSSFREEYQAALSKAGMKKTIVTEIEPAGEFYYAEDYHQQY 17085


>gb|AAXJ01001103.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296088693,
             whole genome shotgun sequence
          Length = 14413

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
 Frame = +3

Query: 24    PEASFANVPGVVKTRVGYTGGSRPNPTYESVCAGDGHTEAMRVW--------FDPAIISY 75
             P   +  +P +   ++G+ G S P     SV      +  + V         F P  +S+
Sbjct: 13392 PADQYFILPQLAPIQLGWQGVSSPQGNRMSVSNNRSDSSRLAVLELQSS*NSFSPGTLSH 13571

Query: 76    -EDLLKQFFREHDPTQKSKCQYKSAVWYHSEAHGTALAAVM 115
              E  LK   +   P  KS+   +   WYH  AH T L A++
Sbjct: 13572 HEP*LKPPQKWQLPLYKSRNFRRDRGWYHKSAHNTRLCALL 13694


>gb|AAXJ01000474.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296279686,
             whole genome shotgun sequence
          Length = 27856

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 89    TQKSKCQYKSAVWYHSEAHGTALAAVMKELE 119
             T++S C +KS VW+  + HG  +  + +ELE
Sbjct: 21566 TRQSFCDHKSTVWFEGDRHGLGVEGI-QELE 21477


>gb|AAXJ01006466.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296755334, whole genome shotgun sequence
          Length = 2298

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 18/68 (26%), Positives = 27/68 (39%)
 Frame = +2

Query: 40  GYTGGSRPNPTYESVCAGDGHTEAMRVWFDPAIISYEDLLKQFFREHDPTQKSKCQYKSA 99
           G T GSR   T  + C G  H+ A      P  + ++     F  E      + C + S+
Sbjct: 914 GNTSGSRRGYTSAATCVGRDHSTAYDT*LLPKKVGFDTCHHLFSGESSANHPA*CSHVSS 1093

Query: 100 VWYHSEAH 107
           V   S+ H
Sbjct: 1094VQV*SDTH 1117


>gb|AAXJ01000513.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296747342,
             whole genome shotgun sequence
          Length = 26781

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 111   LAAVMKELEGKYRVRLATTVDPAGDWWDAEEYHQKY 146
             LAA++  L G    R++  VD  G WW+  +  ++Y
Sbjct: 16821 LAAMIGVLLGDATKRISKVVDSHGSWWEHRQVQRRY 16928


>gb|AAXJ01000255.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296458904,
             whole genome shotgun sequence
          Length = 40654

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
 Frame = +2

Query: 24    PEASFANVPGVVKTRVGYTGGSRPNPTYESVCAGDGHTEAMRVW--------FDPAIISY 75
             P   +  +P +   ++G+ G S       SV      +  + V         F P  +S+
Sbjct: 17066 PADQYFILPQLAPIQLGWQGVSSRQGNRMSVSNNQSDSSRLAVLELQSS*NSFSPGTLSH 17245

Query: 76    -EDLLKQFFREHDPTQKSKCQYKSAVWYHSEAHGTALAAVM 115
              E  LK   +   P  +S+  ++   WYH  AH T L A++
Sbjct: 17246 HEPQLKPPRKW*LPLYRSRNFHRDRGWYHKSAHNTRLCALL 17368


>gb|AAXJ01000624.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296110358,
             whole genome shotgun sequence
          Length = 23360

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 96    YKSAVWYHSEAHGTALAAVMKELEGKYRVRLATTVDPAG 134
             Y++ V +     G  LA   + + G+ R+R A T DPAG
Sbjct: 18084 YRTLVLFIVATTGVYLAVTEQMINGRARIRTAHTRDPAG 18200


>gb|AAXJ01000009.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296741300,
             whole genome shotgun sequence
          Length = 138884

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 66    VWFDPAIISYEDLLKQFFREH-DPTQKSK 93
             V+F+P I+ YE L+K+ F+E   PT KS+
Sbjct: 85847 VFFEPHILGYEHLVKKSFKEDLPPTFKSE 85933


>gb|AAXJ01003735.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296646330,
            whole genome shotgun sequence
          Length = 4103

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 137  WDAEEYHQKYIEKSMMRRGSAGWW 160
            W A   +QK +  S   RGS GWW
Sbjct: 2747 WRAVSVYQKVLVSSRS*RGSQGWW 2676


>gb|AAXJ01001327.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296611798,
            whole genome shotgun sequence
          Length = 12175

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 30   NVPGVVKTRVGYTGGSRPNPTYESV 54
            +VPGV+  + GY+    PNPT  S+
Sbjct: 5466 DVPGVINAQFGYSSVQVPNPTVISI 5540


>gb|AAXJ01000704.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296295104,
            whole genome shotgun sequence
          Length = 20781

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = -2

Query: 84   REHDPTQKSKCQYKSAVWY-HSEAHGT------ALAAVMKELEGKYRVRLATTV 130
            R+H P  +S+C      W+ HS  H        A  ++ ++LE ++++R+   V
Sbjct: 6392 RQH*PAMQSRCHASHRTWFMHSGVHDVHMSKR*AQQSLFQKLEARWQIRVQRLV 6231


>gb|AAXJ01002198.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296286032,
            whole genome shotgun sequence
          Length = 6974

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 44   GSRPNPTYESVCAGDGHTEAMRVWFDPAIISYEDLLKQFFREHDPTQKSKCQ 95
            G R NP  E        T+A   W+ P I   +  ++ +   H PT +  CQ
Sbjct: 5200 GGR*NPKCE--------TQATLRWYPPMIRQKQHTIRSYLPHHTPTLQLDCQ 5331


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.317    0.131    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,638,365
Number of Sequences: 23491
Number of extensions: 270950
Number of successful extensions: 1240
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of query: 160
length of database: 28,681,891
effective HSP length: 98
effective length of query: 62
effective length of database: 26,379,773
effective search space: 1635545926
effective search space used: 1635545926
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
