Command line: [exonerate -m p2g --showtargetgff -q query_caninum.hibrida.fa -t ChlamydomonasMsrACONTRANeospora_caninum.2009.senseU.fastafetch.contig309.fa --exhaustive yes]
Hostname: [ws101144.aulescm.upf.edu]

C4 Alignment:
------------
         Query: query_hibrida
        Target: Contig_0000309 [revcomp]
         Model: protein2genome:local
     Raw score: 425
   Query range: 18 -> 96
  Target range: 1264 -> 1030

   19 : GlyUnkPheTrpGlyValGluLysLeuPheArgLysGluPheAlaGlyGlnLeuArgAlaTh :   39
        |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        GlyCysPheTrpGlyValGluLysLeuPheArgLysGluPheAlaGlyGlnLeuArgAlaTh
 1264 : GGCTGTTTCTGGGGCGTAGAAAAGTTATTCAGGAAGGAATTCGCAGGCCAGCTTCGGGCGAC : 1204

   40 : rThrValGlyTyrAlaGlyGlyThrLysAspHisProCysTyrLysGluValCysThrGlyA :   60
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        rThrValGlyTyrAlaGlyGlyThrLysAspHisProCysTyrLysGluValCysThrGlyA
 1203 : GACAGTTGGCTACGCAGGGGGAACTAAGGACCACCCCTGCTACAAGGAAGTGTGCACAGGGC : 1141

   61 : rgThrGlyHisTyrGluValValGluValGlnPhePheGluAspLysIleThrLeuSerAsp :   80
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        rgThrGlyHisTyrGluValValGluValGlnPhePheGluAspLysIleThrLeuSerAsp
 1140 : GTACGGGGCACTATGAGGTGGTTGAAGTCCAGTTTTTCGAAGACAAAATTACTCTCTCAGAT : 1081

   81 : LeuLeuArgPhePheTrpArgIleHisAspProThrThrMetAsnArg :   96
        ||||||||||||||||||||||||||||||||||||||||||||||||
        LeuLeuArgPhePheTrpArgIleHisAspProThrThrMetAsnArg
 1080 : TTGCTCCGGTTCTTCTGGCGGATCCACGACCCAACAACCATGAACAGG : 1031

vulgar: query_hibrida 18 96 . Contig_0000309 1264 1030 - 425 M 78 234
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
Contig_0000309	exonerate:protein2genome:local	gene	1031	1264	425	-	.	gene_id 1 ; sequence query_hibrida ; gene_orientation .
Contig_0000309	exonerate:protein2genome:local	cds	1031	1264	.	-	.	
Contig_0000309	exonerate:protein2genome:local	exon	1031	1264	.	-	.	insertions 0 ; deletions 0
Contig_0000309	exonerate:protein2genome:local	similarity	1031	1264	425	-	.	alignment_id 1 ; Query query_hibrida ; Align 1265 19 234
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
