Command line: [exonerate -m p2g --showtargetgff -q query_giardia_intestinalis.fa -t chlamydomonasMsrACONTRA2010Giardia_intestinalis.senseU.fastafetch.fa]
Hostname: [ws101142.aulescm.upf.edu]

C4 Alignment:
------------
         Query: query Giardia Intestinalis
        Target: gi|157435604|gb|AACB02000013.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_13, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1074
   Query range: 0 -> 207
  Target range: 224488 -> 225109

      1 : MetAspGlyValGlyArgGlnGluGluAlaValGluValArgHisIleValLeuAlaG :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetAspGlyValGlyArgGlnGluGluAlaValGluValArgHisIleValLeuAlaG
 224489 : ATGGATGGTGTGGGGCGTCAAGAGGAGGCAGTTGAGGTTAGGCATATCGTCCTCGCGG : 224546

     21 : lyGlyCysPheTrpGlyLeuGlnAlaLeuMetAspSerPheLysGlyIleCysThrTh :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lyGlyCysPheTrpGlyLeuGlnAlaLeuMetAspSerPheLysGlyIleCysThrTh
 224547 : GTGGTTGCTTCTGGGGCCTCCAGGCGCTTATGGATAGCTTCAAGGGTATCTGTACCAC : 224603

     40 : rValValGlyTyrAlaAsnAlaSerThrAspAlaArgGlyValMetProSerGlySer :     58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rValValGlyTyrAlaAsnAlaSerThrAspAlaArgGlyValMetProSerGlySer
 224604 : TGTCGTTGGTTATGCAAACGCAAGCACAGATGCACGTGGAGTGATGCCATCTGGTAGC : 224660

     59 : ValGluAlaGlnThrValProPheLeuLysHisAlaAsnValProAlaCysGlyLeuS :     78
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValGluAlaGlnThrValProPheLeuLysHisAlaAsnValProAlaCysGlyLeuS
 224661 : GTAGAAGCCCAGACTGTTCCATTTCTCAAGCATGCAAACGTCCCTGCTTGCGGGCTTT : 224720

     79 : erTyrGlnSerValCysSerGlyAlaThrAspAlaAlaGluAlaValAlaIleGluTy :     97
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          erTyrGlnSerValCysSerGlyAlaThrAspAlaAlaGluAlaValAlaIleGluTy
 224721 : CATATCAGTCCGTCTGTTCTGGCGCAACAGACGCTGCGGAGGCTGTGGCCATTGAGTA : 224777

     98 : rAspArgArgValIleThrLeuGluAsnIleLeuAspIlePhePheAlaValIleAsp :    116
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rAspArgArgValIleThrLeuGluAsnIleLeuAspIlePhePheAlaValIleAsp
 224778 : TGATAGACGGGTGATCACACTAGAAAACATACTCGACATATTCTTCGCTGTGATCGAT : 224834

    117 : ProThrSerLysAsnSerGlnGlyAsnAspValGlyThrGlnTyrArgSerGlyIleT :    136
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ProThrSerLysAsnSerGlnGlyAsnAspValGlyThrGlnTyrArgSerGlyIleT
 224835 : CCGACGAGCAAAAATTCTCAAGGAAATGACGTCGGGACACAGTACAGGTCCGGGATTT : 224894

    137 : yrTyrLeuProCysGluLysAspAspValGlnIleIleGluLysLysValGlnGluLe :    155
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yrTyrLeuProCysGluLysAspAspValGlnIleIleGluLysLysValGlnGluLe
 224895 : ACTACCTTCCATGTGAAAAGGATGACGTTCAGATAATAGAAAAGAAAGTGCAGGAGCT : 224951

    156 : uArgProSerTyrGluLysProIleValThrGluValAlaGluLeuLysAsnTyrSer :    174
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uArgProSerTyrGluLysProIleValThrGluValAlaGluLeuLysAsnTyrSer
 224952 : TCGGCCATCCTATGAGAAACCGATTGTGACAGAGGTAGCTGAGCTGAAAAACTATAGC : 225008

    175 : ValAlaGluGluMetHisGlnLysTyrLeuAlaSerArgProAsnGlyTyrCysHisI :    194
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ValAlaGluGluMetHisGlnLysTyrLeuAlaSerArgProAsnGlyTyrCysHisI
 225009 : GTGGCCGAAGAGATGCATCAAAAGTACCTGGCAAGTAGGCCAAATGGGTACTGCCACA : 225068

    195 : leAsnValSerAlaAlaArgGluArgPheAlaHisLeuLeu :    207
          |||||||||||||||||||||||||||||||||||||||||
          leAsnValSerAlaAlaArgGluArgPheAlaHisLeuLeu
 225069 : TAAATGTCTCTGCTGCCAGAGAGAGGTTTGCACACCTTCTA : 225109

vulgar: query 0 207 . gi|157435604|gb|AACB02000013.1| 224488 225109 + 1074 M 207 621
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|157435604|gb|AACB02000013.1|	exonerate:protein2genome:local	gene	224489	225109	1074	+	.	gene_id 1 ; sequence query ; gene_orientation .
gi|157435604|gb|AACB02000013.1|	exonerate:protein2genome:local	cds	224489	225109	.	+	.	
gi|157435604|gb|AACB02000013.1|	exonerate:protein2genome:local	exon	224489	225109	.	+	.	insertions 0 ; deletions 0
gi|157435604|gb|AACB02000013.1|	exonerate:protein2genome:local	similarity	224489	225109	1074	+	.	alignment_id 1 ; Query query ; Align 224489 1 621
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
