Command line: [exonerate -m p2g --showtargetgff -q query_Chlamydomonas_reinhardtii_MsrA.x.fa -t chlamydomonasCONTRAEntamoeba_invadens.2009.MsrA.genomic.fastasubseq.fa]
Hostname: [ws101083.aulescm.upf.edu]

C4 Alignment:
------------
         Query: Chlamydomonas_reinhardtii.MsrA
        Target: gi|145686515|gb|AANW02001203.1|:subseq(1,2425) Entamoeba invadens IP1 gcontig_1105074713651, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 167
   Query range: 11 -> 89
  Target range: 95 -> 332

  12 : GluLeuAlaThrPheAlaLeuGlyUnkPheTrpHisProGluAlaSerPheAlaAsnValProG :  33
       :!!  !|||! !||||||  !|||   ||||||  !  !! !  ! !!|||! !!..  !||||
       LysThrAlaIlePheAlaGlyGlyCysPheTrpCysMetValLysProPheAspThrTyrProG
  96 : AAAACAGCAATCTTTGCAGGTGGATGCTTTTGGTGTATGGTGAAGCCTTTTGACACGTATCCTG : 159

  34 : lyValValLysThrArgValGlyTyrThrGlyGlySerArgProAsnProThrTyrGluSerVa :  54
       |||||  !!....!..!||||||||||||||||||!!!! !  !||||||||||||!!:..!||
       lyValLysSerValGluValGlyTyrThrGlyGlyThrThrValAsnProThrTyrAspAspVa
 160 : GTGTCAAAAGTGTCGAAGTTGGTTATACTGGAGGAACTACAGTGAATCCCACATATGACGATGT : 222

  55 : lCysAlaGlyAsp<->GlyHisThrGluAlaMetArgValTrpPheAspProAlaIleIleSer :  74
       ||||.!!|||:!!   ||||||  !||||||:!:!:!:!!  !!:!|||  !:!!  !!!: !!
       lCysThrGlyAsnThrGlyHisArgGluAlaValGlnIleValTyrAspGluSerGlnMetPro
 223 : CTGTACTGGCAATACTGGGCACCGTGAAGCGGTCCAAATCGTGTATGATGAGTCTCAAATGCCG : 285

  75 : TyrGluAspLeuLeuLysGlnPhePheArgGluHisAspProThr :  89
       |||..!!!:||||||:!!   !:!|||  !...  !|||||||||
       TyrArgGluLeuLeuGluIleTyrPheLeuSerIleAspProThr
 286 : TACCGAGAATTACTTGAAATTTATTTCTTAAGTATTGACCCGACC : 332

vulgar: Chlamydomonas_reinhardtii.MsrA 11 89 . gi|145686515|gb|AANW02001203.1|:subseq(1,2425) 95 332 + 167 M 47 141 G 0 3 M 31 93
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-12
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|145686515|gb|AANW02001203.1|:subseq(1,2425)	exonerate:protein2genome:local	gene	96	332	167	+	.	gene_id 1 ; sequence Chlamydomonas_reinhardtii.MsrA ; gene_orientation .
gi|145686515|gb|AANW02001203.1|:subseq(1,2425)	exonerate:protein2genome:local	cds	96	332	.	+	.	
gi|145686515|gb|AANW02001203.1|:subseq(1,2425)	exonerate:protein2genome:local	exon	96	332	.	+	.	insertions 3 ; deletions 0
gi|145686515|gb|AANW02001203.1|:subseq(1,2425)	exonerate:protein2genome:local	similarity	96	332	167	+	.	alignment_id 1 ; Query Chlamydomonas_reinhardtii.MsrA ; Align 96 12 141 ; Align 240 59 93
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
