Command line: [exonerate -m p2g --showtargetgff -q query_s11.fa -t chlamydomonasCONTRAEmiliana_huxleyi.2009.MsrA.fastarevcomp.s11.2.fa]
Hostname: [ws101149.aulescm.upf.edu]

C4 Alignment:
------------
         Query: query_s11
        Target: scaffold_11:subseq(588244,4134) [revcomp]
         Model: protein2genome:local
     Raw score: 253
   Query range: 1 -> 72
  Target range: 1851 -> 2135

    2 : AlaThrAsnGlyAsnGlyAlaSerGlyAlaGluLeuAlaThrPheAlaLeuGlyUnkPheTr :   22
        !.!.!!..!|||.!.! !  !!!! !!.!!|||  !|||||||||!.!||||||   |||  
        GlyAlaArgGlyGluGluHisThrArgThrGluThrAlaThrPheGlyLeuGly***PheHi
 1852 : GGCGCACGCGGGGAGGAGCATACCCGCACAGAGACGGCCACCTTTGGCCTCGGCTGATTCCA : 1912

   23 : pHisProGluAlaSerPheSerArgProPro{G}  >>>> Target Intron 1 >>>>  :   33
         !  |||:!!:!!..!!:!..!  !  !|||{|}            71 bp           
        sLeuProGlnSerGluTyrAspSerIlePro{G}++                         +
 1913 : CCTGCCGCAGTCCGAGTACGACTCGATCCCG{G}gt.........................a : 2015

   34 :  {ly}ValLeuArgSerArgValGlyTyrThrGlyGlyAspGlyAspGlyAspProSerGly :   52
         {||}|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        +{ly}ValLeuArgSerArgValGlyTyrThrGlyGlyAspGlyAspGlyAspProSerGly
 2016 : g{GC}GTCCTGCGCTCCCGCGTCGGCTACACGGGCGGCGACGGCGACGGGGACCCGTCCGGG : 2073

   53 : AlaProProSerTyrGluSerValCysAlaArgAlaAsnThrHisThrGluAlaAlaArg :   72
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        AlaProProSerTyrGluSerValCysAlaArgAlaAsnThrHisThrGluAlaAlaArg
 2074 : GCGCCACCGTCGTACGAGAGCGTCTGCGCCCGCGCGAACACGCACACCGAGGCCGCTCGC : 2135

vulgar: query_s11 1 72 . scaffold_11:subseq(588244,4134) 1851 2135 + 253 M 31 93 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 39 117
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_11:subseq(588244,4134)	exonerate:protein2genome:local	gene	1852	2135	253	+	.	gene_id 1 ; sequence query_s11 ; gene_orientation +
scaffold_11:subseq(588244,4134)	exonerate:protein2genome:local	cds	1852	1945	.	+	.	
scaffold_11:subseq(588244,4134)	exonerate:protein2genome:local	exon	1852	1945	.	+	.	insertions 0 ; deletions 0
scaffold_11:subseq(588244,4134)	exonerate:protein2genome:local	splice5	1946	1947	.	+	.	intron_id 1 ; splice_site "GT"
scaffold_11:subseq(588244,4134)	exonerate:protein2genome:local	intron	1946	2016	.	+	.	intron_id 1
scaffold_11:subseq(588244,4134)	exonerate:protein2genome:local	splice3	2015	2016	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_11:subseq(588244,4134)	exonerate:protein2genome:local	cds	2017	2135	.	+	.	
scaffold_11:subseq(588244,4134)	exonerate:protein2genome:local	exon	2017	2135	.	+	.	insertions 0 ; deletions 0
scaffold_11:subseq(588244,4134)	exonerate:protein2genome:local	similarity	1852	2135	253	+	.	alignment_id 1 ; Query query_s11 ; Align 1852 2 93 ; Align 2019 34 117
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
