TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23452038|gb|AAN32904.1| methionine-S-sulfoxide reductase
MsrA1 [Chlamydomonas reinhardtii] 
         (160 letters)

Database: genome.fa 
           4707 sequences; 47,745,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pathogen_EIMER_contig_00031474 - eimer-2383d07.q1k low_quality_r...    58   5e-09
pathogen_EIMER_contig_00007063 - eimer-2244g15.p1k low_quality_r...    28   3.9  
pathogen_EIMER_contig_00006794 - eimer-2708e02.p1k low_quality_r...    28   5.1  
pathogen_EIMER_contig_00030621 - eimer-1437b12.p1k low_quality_r...    27   6.7  

>pathogen_EIMER_contig_00031474 - eimer-2383d07.q1k low_quality_removed
          Length = 11208

 Score = 57.8 bits (138), Expect = 5e-09
 Identities = 38/109 (34%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
 Frame = -2

Query: 8    ASGAELATFALGUFWHPEASFANV--PGVVKTRVGYTGGSRPNPTYESVCAGD-GHTEAM 64
            A+ AE      G FW  E  F       +  T VGY GG  P PTY  VC+   GH EA+
Sbjct: 4661 AAAAESIVLGGGCFWGLEKLFVEEFKDKLEATCVGYAGGHTPQPTYAQVCSSKTGHFEAL 4482

Query: 65   RVWFDPAIISYEDLLKQFFREHDPTQKSKCQYKSAVWYHSEAHGTALAA 113
            ++ F P  +   +LL  F+  HDPT   +    +A       H  A AA
Sbjct: 4481 KISFFPQKVHLRELLTFFWTIHDPTTPDRSAAAAAPVLLLLQHAAAAAA 4335



 Score = 33.9 bits (76), Expect = 0.072
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -1

Query: 95   QYKSAVWYHSEAHGTALAAVMKELEGKYRVRLATTV--DPAG-DWWDAEEYHQKYIEKS 150
            QY+SAV          +  +  E++ K+  ++ T +  DP    +W AE++HQKY+ K+
Sbjct: 2709 QYRSAVCVSDPTQLPLVLQIKNEMQKKWNFKIQTEIISDPNKCHFWPAEDHHQKYLFKN 2533


>pathogen_EIMER_contig_00007063 - eimer-2244g15.p1k low_quality_removed
          Length = 8820

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 79   LKQFFREHDPTQKSKCQYKSAVWYHSEAHGTALAAVMKELEG 120
            L+   R HD +QK   ++KSA  +H  ++  A  A+   + G
Sbjct: 1727 LQHLVRSHDASQKMVGEHKSATIHHVLSYTAATKALRSSMHG 1602


>pathogen_EIMER_contig_00006794 - eimer-2708e02.p1k low_quality_removed
          Length = 12837

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = -3

Query: 26   ASFANVPGVVKTRVGYTGGSRPNPTYESVCAGDGHTEAMRVWFDPAIISYEDLLKQFFRE 85
            +++ + P + +       G  P   Y       GH +++       +IS   LL Q +++
Sbjct: 7540 STYLHTPKIFRLEQLQPTGCEPQTNY-------GHADSIPARPQKNLISRLFLL-QSYQK 7385

Query: 86   HDPTQKSKCQYKS-AVWYHSEAHGTALAAVMK 116
            H P+Q+S CQ++   ++ H E       A+++
Sbjct: 7384 HSPSQRSYCQWRPFQLFEHKETDKPDSTAILR 7289



 Score = 26.9 bits (58), Expect = 8.8
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = -1

Query: 26  ASFANVPGVVKTRVGYTGGSRPNPTYESVCAGDGHTEAMRVWFDPAIISYEDLLKQFFRE 85
           +++ + P + +       G  P   Y       GH +++       +IS   LL Q +++
Sbjct: 270 STYLHTPKIFRLEQLQPTGCEPQTNY-------GHADSIPARPQKNLISRLFLL-QSYQK 115

Query: 86  HDPTQKSKCQYK 97
           H P+Q+S CQ++
Sbjct: 114 HSPSQRSYCQWR 79


>pathogen_EIMER_contig_00030621 - eimer-1437b12.p1k low_quality_removed
          Length = 144853

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
 Frame = -3

Query: 8    ASGAELAT---FALGUFWHPEASFANVPGVVKTRVGYTGGSRPNPTYESVCA 56
            ASG  L+    F    FW    SFA   G+    V   G   PNP Y S  A
Sbjct: 8219 ASGRALSGGK*FYFSSFWSSRLSFAPARGLGCLLVTCVGCCCPNPVYSSTLA 8064


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 47,745,626
  Number of sequences in database:  4707
  
Lambda     K      H
   0.317    0.131    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,902,279
Number of Sequences: 4707
Number of extensions: 128348
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 508
length of query: 160
length of database: 15,915,208
effective HSP length: 94
effective length of query: 66
effective length of database: 15,472,750
effective search space: 1021201500
effective search space used: 1021201500
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
