TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23452038|gb|AAN32904.1| methionine-S-sulfoxide reductase
MsrA1 [Chlamydomonas reinhardtii] 
         (160 letters)

Database: genome.fa 
           8 sequences; 8,358,125 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR940353.1| Theileria annulata strain Ankara isolate clone C...    25   5.3  

>emb|CR940353.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN
               PROGRESS ***
          Length = 1842271

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 67      WFDPAIISYEDLLKQFFREHDPTQKSKCQYKSAV 100
               W  P I+S  D++      H   +K KC+YK  +
Sbjct: 1572635 WRYPIILSLMDII------HQVVEKGKCKYKKVI 1572552



 Score = 25.0 bits (53), Expect = 7.0
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = +1

Query: 39      VGYTGGSRPN---PTYESVCAGDG 59
               VGY+  S P    P YE VC  DG
Sbjct: 1590262 VGYSSFSNPQFSFPEYEQVCNSDG 1590333


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 8,358,125
  Number of sequences in database:  8
  
Lambda     K      H
   0.317    0.131    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,294,714
Number of Sequences: 8
Number of extensions: 15673
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 15
length of query: 160
length of database: 2,786,041
effective HSP length: 83
effective length of query: 77
effective length of database: 2,785,377
effective search space: 214474029
effective search space used: 214474029
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
