TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|23452038|gb|AAN32904.1| methionine-S-sulfoxide reductase
MsrA1 [Chlamydomonas reinhardtii] 
         (160 letters)

Database: genome.fa 
           31,653 sequences; 18,560,894 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

terra221a09.q1k                                                        25   8.5  

>terra221a09.q1k 
          Length = 246

 Score = 25.0 bits (53), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 88  PTQKSKCQYKSAVWYHSEAHGTALAAVMKELEGK 121
           P QK+    KS++ YH++   T    +MKEL+ K
Sbjct: 91  PIQKTYGPAKSSMKYHTKNQPTIGRKLMKELQPK 192


  Database: genome.fa
    Posted date:  Feb 1, 2010  4:17 PM
  Number of letters in database: 18,560,894
  Number of sequences in database:  31,653
  
Lambda     K      H
   0.317    0.131    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,730,393
Number of Sequences: 31653
Number of extensions: 32548
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of query: 160
length of database: 6,186,964
effective HSP length: 85
effective length of query: 75
effective length of database: 3,496,459
effective search space: 262234425
effective search space used: 262234425
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
