TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1
         (499 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ct...    75   1e-17

>gb|AAGK01000005.1| Theileria parva strain Muguga chromosome 3 ctg_530, whole genome shotgun
              sequence
          Length = 1317241

 Score = 74.7 bits (182), Expect(2) = 1e-17
 Identities = 34/75 (45%), Positives = 43/75 (57%)
 Frame = +2

Query: 13     YDLIIIXXXXXXXXXXXXXXXXXXXVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQ 72
              YDL+++                    ++ D+VTP+P GT WG+GGTCVNVGCIPKKLMH 
Sbjct: 213284 YDLVVLGGGPAGMAAAKEAARLGKRTVLFDYVTPSPRGTSWGVGGTCVNVGCIPKKLMHY 213463

Query: 73     AALLGQALQDSRNYG 87
              A+LL     D   YG
Sbjct: 213464 ASLLRSTQYDRFQYG 213508



 Score = 74.7 bits (182), Expect = 4e-14
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = +2

Query: 421    CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFT 480
              C +K+IC  +D  ++VG H +GPNAGE+ QGF+        K  LD T+GIHP  AE F 
Sbjct: 216128 CLSKVIC-LRDG-KIVGMHFVGPNAGEIMQGFSVLFTLNAKKSDLDKTVGIHPTDAESFV 216301

Query: 481    TLSVTKRSGAS-ILQAGCUG 499
               L+VTK SG S +   GC G
Sbjct: 216302 NLTVTKASGDSWVATGGCAG 216361



 Score = 73.9 bits (180), Expect = 7e-14
 Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 22/119 (18%)
 Frame = +3

Query: 298    RKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRL 357
              R++GLE  G       G I +   E+TN+  +YA+GDI+    +L PVAI++  LL QRL
Sbjct: 215121 RELGLEFDG------NGNI-IAPNEETNIKNVYAVGDIVSKVPKLAPVAIKSSELLIQRL 215279

Query: 358    YAGSTVK----------------------CDYENVPTTVFTPLEYGACGLSEEKAVEKF 394
              Y+ +  K                       +YENVP  V+TP EY +CGL+EE+A+  F
Sbjct: 215280 YSNTNTKVHSFINY*PVIVYS*FIVNLT*MNYENVPKCVYTPFEYSSCGLTEEEAIVIF 215456



 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = +1

Query: 216    VTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 259
              V V VRSILLRGFD+    K+ E ME  G+ F+ Q +P K+E++
Sbjct: 214612 VDVSVRSILLRGFDRQCVRKVEELMEASGVSFLYQKLPTKIEKV 214743



 Score = 46.2 bits (108), Expect(2) = 2e-11
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +3

Query: 194    LVVGASYVALECAGFLAGIGLDVTVMVRSILL 225
              L+VGASYVALECAGFL G+G DV   +  I+L
Sbjct: 214314 LIVGASYVALECAGFLTGLGFDVYYTITIIIL 214409



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 21/219 (9%)
 Frame = -2

Query: 287    VMLAIGRDACTRKIGLETVGVKINEKTGKIP-------VTDEEQTN--VPYIYAIGDI-- 335
              V++A+GR   T  +G++ +GV ++   GK+P       + D +  N  V  +YAIGD+  
Sbjct: 459399 VLVAMGRVPYTEGLGIDKLGVTLDY--GKVPTDNNLRVLKDPKDPNSVVENVYAIGDVTY 459226

Query: 336    ---LEDKVELTPVAIQAGRLLA-------QRLYAGSTVKCDYENVPTTVFTPLEYGACGL 385
                 L  K E   + I  G +L        Q +  GS V+     +P+ ++T  E    G 
Sbjct: 459225 GPMLAHKAEEDGL-IALGHILGKSFVHHPQGVTLGS-VQVVPNVIPSVIYTEPEIAGVGE 459052

Query: 386    SEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNA 445
              +E+  ++K G +    Y    +P      ++  N+    I   + +  +++G  ++GP+ 
Sbjct: 459051 TEQN-LQKLGVK----YKKSVFPFMANSRAKIYNESDGFIKLLSTEENKLLGAWMIGPHV 458887

Query: 446    GEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSV 484
               E+    A A+  G + + +      HP  +E     S+
Sbjct: 458886 SEMIHTTALAITYGASSEDVTRMCFAHPSLSEAIKESSL 458770



 Score = 39.3 bits (90), Expect(2) = 2e-11
 Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 155    ERFLIATGERPRYLG-IPGDKEYCISSDDLFSLPYCPGKT 193
              E+ +IA GERP     + G  EY I+SDDLF L   PGKT
Sbjct: 214103 EKVIIAVGERPYVPSDVQGALEYAITSDDLFKLNTSPGKT 214222



 Score = 31.6 bits (70), Expect(2) = 1e-17
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 105    VQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNN 145
              +QN++  LN+ YR  L    V Y NAYG     + ++ T+N
Sbjct: 213618 IQNYVKMLNFSYRSGLTTAGVDYINAYGTLKHNNTVEYTHN 213740



 Score = 30.4 bits (67), Expect = 0.87
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -1

Query: 55     LGGTCVNVGCIPKK 68
              LGGTC+N GCIP K
Sbjct: 460375 LGGTCLNCGCIPSK 460334



 Score = 26.9 bits (58), Expect = 9.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 392    EKFGEENIEVYHSYFWPLEWTIPSRDNNK 420
              E+FGEEN+E+Y   +  LE +   R N K
Sbjct: 215856 ERFGEENLEIYLKEYNNLEISPVHRINKK 215942


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,100,968
Number of Sequences: 9
Number of extensions: 55833
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 33
length of query: 499
length of database: 2,782,535
effective HSP length: 95
effective length of query: 404
effective length of database: 2,781,680
effective search space: 1123798720
effective search space used: 1123798720
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)