TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1 #anophagefferens # scaffold_11:subseq(783554,7436).pep  
         (488 letters)

Database: genome.fa 
           8 sequences; 8,358,125 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR940352.2| Theileria annulata strain Ankara isolate clone C...    87   8e-18
emb|CR940347.1| Theileria annulata strain Ankara isolate clone C...    30   1.4  
emb|CR940353.1| Theileria annulata strain Ankara isolate clone C...    29   1.9  
emb|CR940348.1| Theileria annulata strain Ankara isolate clone C...    27   7.2  

>emb|CR940352.2| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN
              PROGRESS ***, 3 ordered pieces
          Length = 1898942

 Score = 87.0 bits (214), Expect = 8e-18
 Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
 Frame = +2

Query: 411    CFAKLVVDKSTGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFTS 470
              C +K++  K  GK++G H++GPNAGEI QGFS+ +   A  +D   TVGIHPT AE F +
Sbjct: 227330 CLSKVICLKD-GKIIGMHFVGPNAGEIMQGFSVLLTLNAKKSDLDKTVGIHPTDAESFVN 227506

Query: 471    MTVTKSSGES-AAKGGCXG 488
              +TVTKSSG+S  A GGC G
Sbjct: 227507 LTVTKSSGKSWIATGGCAG 227563



 Score = 71.6 bits (174), Expect(2) = 3e-17
 Identities = 29/48 (60%), Positives = 39/48 (81%)
 Frame = +2

Query: 20     KECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHTASII 67
              KE ++LG +  + D+V PS  G++WG+GGTCVNVGCIPKKLMH AS++
Sbjct: 223070 KESSRLGKRTVLFDYVTPSARGTSWGVGGTCVNVGCIPKKLMHYASLL 223213



 Score = 53.5 bits (127), Expect = 9e-08
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 4/205 (1%)
 Frame = -3

Query: 266    HEYDTVLVATGRYADTAALGIDNV----PGASANVNAKTKKLECVDEQLPGAPHVYAIGD 321
              H  D VLVA GR   T  LG++ +           +   + L    +      +VYAIGD
Sbjct: 463230 HVGDKVLVAMGRVPYTEGLGLEKLGVVLDSGRVPTDVNLRVLRDHKDPTSKLENVYAIGD 463051

Query: 322    VVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATTIFTPLEYGTIGLSEDDAKAQL 381
              V  G P L   A E GL     + G      D+  V + I+T  E   +G +E +    L
Sbjct: 463050 VTYG-PMLAHKAEEDGLVALGHILGKNLIESDHNLVPSVIYTNPEIAGVGQTEQN----L 462886

Query: 382    GECNVESYISEFAPLEYALSETRSERGDGCFAKLVVDKSTGKVVGFHYLGPNAGEITQGF 441
               +  ++   S F  +  + ++  +E     F KL+ ++   K++G   +GP+  E+    
Sbjct: 462885 QKLGIKYKKSVFPFMANSRAKIYNETEG--FVKLLANEQN-KLLGAWMVGPHVSEMVHLT 462715

Query: 442    SIAMRKGATYADFISTVGIHPTVAE 466
               +A+  GA+  D       HP+++E
Sbjct: 462714 VLAITYGASSEDVTRMCFAHPSLSE 462640



 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
 Frame = -3

Query: 2      FDYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIP-KKL 60
              F YD++V+G G GG   + + A+ G KV V++        ST  LGGTC+N GCIP K L
Sbjct: 464325 FRYDLLVLGAGPGGYTMAIKAAQHGLKVGVVE------KRST--LGGTCLNCGCIPSKSL 464170

Query: 61     MHTASI 66
              ++T+ I
Sbjct: 464169 LNTSHI 464152



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 22/39 (56%), Positives = 26/39 (66%)
 Frame = +1

Query: 211    VRSILLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEK 249
              VRSILLRGFDR+CV K+E  ++  GV       P KIEK
Sbjct: 224974 VRSILLRGFDRQCVKKVEELMEASGVLFLYHKLPIKIEK 225090



 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 38/100 (38%)
 Frame = +2

Query: 144    VTAARFIVAVGGRPNKLGCPGG--EHAIDSDDLFSLPKAPGRV----------------- 184
              V+  + I+A+G RP       G  E+AI SDDLF L   PG+                  
Sbjct: 224456 VSGDKIIIAIGERPYIPSDVEGANEYAITSDDLFQLNTNPGKTYHSSPTLFISNTIHL*Y 224635

Query: 185    -------------------LCVGGGYIALECGGFTAGMGY 205
                                 L VG  Y+ALEC GF  G+GY
Sbjct: 224636 YYSYLILFI*FIKCIFICRLIVGASYVALECAGFLTGLGY 224755



 Score = 35.8 bits (81), Expect = 0.020
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +2

Query: 96     TVQDHIKSLNFKYRVALREAGITYLNRLG 124
              T+Q++IK LNF YR +L  +G+ Y+N  G
Sbjct: 223847 TIQNYIKMLNFSYRSSLLTSGVDYINAFG 223933



 Score = 34.7 bits (78), Expect = 0.045
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 316    VYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDY 354
              +YA+GD+V   P+L PVAI++   L +RL+      + Y
Sbjct: 225928 IYAVGDIVSKVPKLAPVAIKSSELLIQRLYSNNNTQVYY 226044



 Score = 34.7 bits (78), Expect = 0.045
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 3      DYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVG 54
              DYD +VVG G  GL  + E + LG K A +  + P+ + +    GG    +G
Sbjct: 467505 DYDAIVVGAGGAGLRSALELSILGHKTACISKLFPTRSHTVAAQGGINAALG 467350



 Score = 33.5 bits (75), Expect(2) = 3e-17
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +1

Query: 4      YDVVVVGGGSGGLACSKECAKLG 26
              YD++V+GGG  G+A +KE ++LG
Sbjct: 222964 YDLIVLGGGPAGMAAAKEASRLG 223032



 Score = 32.0 bits (71), Expect = 0.29
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 432    PNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFTSMTVTKSSGESAAKGGCXG 488
              P  G  + G    M KGA +     T+G       +FT+M  T ++G S+   GC G
Sbjct: 171703 PGKGANSMGMECTMGKGADFTAMECTLG----KGADFTAMECTSTNGTSSIGTGCKG 171861



 Score = 31.6 bits (70), Expect = 0.38
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 352    MDYECVATTIFTPLEYGTIGLSEDDA 377
              M+YE V   ++TP EY + GL+E++A
Sbjct: 226169 MNYENVPKCVYTPFEYSSCGLTEEEA 226246



 Score = 28.1 bits (61), Expect = 4.2
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
 Frame = -2

Query: 2       FDYDVVVVGGGSGGLA-------CSKECAKLGAKVAVLDFVKPSPAGSTWGLG-GTCVNV 53
               F  DVV++GGG GG         CS++   +G   A      P   G+  G+G GT +  
Sbjct: 1721482 FSSDVVLIGGGGGGPVGLLTIGLCSRDVVLIGGGGAF-----PKCFGTIGGIGIGTALPF 1721318

Query: 54      GCI 56
                C+
Sbjct: 1721317 PCL 1721309


>emb|CR940347.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN
               PROGRESS ***
          Length = 2592520

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
 Frame = +1

Query: 124     GEFEDKNTISLTDKKGNKTSVTAARFIVAVGGRPNKLGCPGGEHAIDS---DDLFSLPKA 180
               G+ E +N + L  KK +K S + A  +  +  +P   G    E   DS    D   L   
Sbjct: 1968376 GQIEIQNEVHLI-KKDDKVSASGATLLQKLNIKPFSYGLKV-EKIYDSGAISDASVLDVT 1968549

Query: 181     PGRVLCV---GGGYIALECGGFTAGMGYPTTCMVRSILLRGFDRECVGKI 227
                  +L V   G  Y        +  +GYPTT  V   +L GF + CVG +
Sbjct: 1968550 DEDILAVVKLGVSY----ANALSRQLGYPTTLSVDHAMLEGF-KNCVGLV 1968684



 Score = 29.3 bits (64), Expect = 1.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 1       GFDYDVVVVGGGSGGLACSKECAKLGAKVAVLD 33
               G  Y+VV+VGGG GGLA           V  L+
Sbjct: 1078546 GSKYEVVIVGGGVGGLAAFNYLKSKNVNVVCLE 1078644



 Score = 27.3 bits (59), Expect = 7.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 80     WKDAAAGAHDWESMKSTVQDHIKSLNFKYRVALREAGITYL 120
              WKD  + +HD   +K   ++ +   +  YRV + +   TY+
Sbjct: 183958 WKDITSTSHDVTKLKFIGENDLVLTSSDYRVTIVDLSFTYI 183836


>emb|CR940353.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN
              PROGRESS ***
          Length = 1842271

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 4      YDVVVVGGGSGGLACSKECAKLGAKVAVL 32
              +DV+VVGGG  G+  +   A++GA   ++
Sbjct: 254329 FDVLVVGGGHSGIEAATAAARVGANTLLI 254243


>emb|CR940348.1| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN
              PROGRESS ***
          Length = 1979170

 Score = 27.3 bits (59), Expect = 7.2
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +2

Query: 208    TCMVRSILLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEKDAATGVLTVTDSGGGVHE 267
              T +V  ILL+ F++EC+   +  +        V V  +K+++  + G+L+  ++GG +  
Sbjct: 425729 TNIVNVILLKVFEKECMKSPKNDL--------VNVIKSKLKRHISFGILSSREAGGYIPL 425884

Query: 268    Y 268
              Y
Sbjct: 425885 Y 425887


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 8,358,125
  Number of sequences in database:  8
  
Lambda     K      H
   0.317    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,443,018
Number of Sequences: 8
Number of extensions: 41875
Number of successful extensions: 205
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 141
length of query: 488
length of database: 2,786,041
effective HSP length: 95
effective length of query: 393
effective length of database: 2,785,281
effective search space: 1094615433
effective search space used: 1094615433
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
