TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1
         (499 letters)

Database: genome.fa 
           8 sequences; 8,358,125 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR940352.2| Theileria annulata strain Ankara isolate clone C...    78   4e-15

>emb|CR940352.2| Theileria annulata strain Ankara isolate clone C9, *** SEQUENCING IN
              PROGRESS ***, 3 ordered pieces
          Length = 1898942

 Score = 78.2 bits (191), Expect = 4e-15
 Identities = 52/152 (34%), Positives = 68/152 (44%), Gaps = 44/152 (28%)
 Frame = +2

Query: 392    EKFGEENIEVYHSYFWPLEWTIPSRDNNK------------------------------- 420
              EK+GE+N+E+Y   +  LE +   R N K                               
Sbjct: 227114 EKYGEDNLEIYLKEYNNLEISPVHRINKKTNDGNFFYIFLLFSHLFPYFLIYSLIYNYFI 227293

Query: 421    ------------CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDST 468
                          C +K+IC  KD  +++G H +GPNAGE+ QGF+  L     K  LD T
Sbjct: 227294 *LFVLEFDYPMTCLSKVIC-LKDG-KIIGMHFVGPNAGEIMQGFSVLLTLNAKKSDLDKT 227467

Query: 469    IGIHPVCAEVFTTLSVTKRSGAS-ILQAGCUG 499
              +GIHP  AE F  L+VTK SG S I   GC G
Sbjct: 227468 VGIHPTDAESFVNLTVTKSSGKSWIATGGCAG 227563



 Score = 75.1 bits (183), Expect = 3e-14
 Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
 Frame = +2

Query: 39     MVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG-WKVEETVKHD 97
              ++ D+VTP+  GT WG+GGTCVNVGCIPKKLMH A+LL  +  D   YG    +E    +
Sbjct: 223100 VLFDYVTPSARGTSWGVGGTCVNVGCIPKKLMHYASLLRSSNYDKFQYGLTNTQELTPIN 223279

Query: 98     WDRMIEAV 105
              W+++I+ +
Sbjct: 223280 WNKLIQVI 223303



 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 38/110 (34%)
 Frame = +2

Query: 153    SAERFLIATGERPRYL--GIPGDKEYCISSDDLFSLPYCPGKT----------------- 193
              S ++ +IA GERP Y+   + G  EY I+SDDLF L   PGKT                 
Sbjct: 224459 SGDKIIIAIGERP-YIPSDVEGANEYAITSDDLFQLNTNPGKTYHSSPTLFISNTIHL*Y 224635

Query: 194    -------------------LVVGASYVALECAGFLAGIGLDVTVMVRSIL 224
                                 L+VGASYVALECAGFL G+G +V+  + + L
Sbjct: 224636 YYSYLILFI*FIKCIFICRLIVGASYVALECAGFLTGLGYNVSYQLLNYL 224785



 Score = 53.1 bits (126), Expect(2) = 2e-14
 Identities = 30/71 (42%), Positives = 46/71 (64%)
 Frame = +1

Query: 300    IGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYA 359
              I L+ VG++  +  G I VT+EE TN+  IYA+GDI+    +L PVAI++  LL QRLY+
Sbjct: 225847 IDLKEVGIEF-DGNGNILVTNEE-TNIKDIYAVGDIVSKVPKLAPVAIKSSELLIQRLYS 226020

Query: 360    GSTVKCDYENV 370
               +  +  Y ++
Sbjct: 226021 NNNTQVYYSSL 226053



 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 43/202 (21%), Positives = 94/202 (46%), Gaps = 11/202 (5%)
 Frame = -3

Query: 287    VMLAIGRDACTRKIGLETVGVKINEKTGKIPVT---------DEEQTNVPYIYAIGDILE 337
              V++A+GR   T  +GLE +GV ++  +G++P            +  + +  +YAIGD+  
Sbjct: 463215 VLVAMGRVPYTEGLGLEKLGVVLD--SGRVPTDVNLRVLRDHKDPTSKLENVYAIGDVTY 463042

Query: 338    DKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEE 397
                + L   A + G +    +   + ++ D+  VP+ ++T  E    G +E+  ++K G +
Sbjct: 463041 GPM-LAHKAEEDGLVALGHILGKNLIESDHNLVPSVIYTNPEIAGVGQTEQN-LQKLGIK 462868

Query: 398    NIEVYHSYFWPLEWTIPSRDNNKC--YAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAA 455
                  Y    +P      ++  N+   + K++ N  +  +++G  ++GP+  E+      A
Sbjct: 462867 ----YKKSVFPFMANSRAKIYNETEGFVKLLAN--EQNKLLGAWMVGPHVSEMVHLTVLA 462706

Query: 456    LKCGLTKKQLDSTIGIHPVCAE 477
              +  G + + +      HP  +E
Sbjct: 462705 ITYGASSEDVTRMCFAHPSLSE 462640



 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = +1

Query: 216    VTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQ 258
              V V VRSILLRGFD+    K+ E ME  G+ F+   +PIK+E+
Sbjct: 224962 VDVSVRSILLRGFDRQCVKKVEELMEASGVLFLYHKLPIKIEK 225090



 Score = 42.4 bits (98), Expect(2) = 2e-14
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = +2

Query: 366    DYENVPTTVFTPLEYGACGLSEEKAV 391
              +YENVP  V+TP EY +CGL+EE+A+
Sbjct: 226172 NYENVPKCVYTPFEYSSCGLTEEEAI 226249



 Score = 30.4 bits (67), Expect = 0.87
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 55     LGGTCVNVGCIPKK 68
              LGGTC+N GCIP K
Sbjct: 464217 LGGTCLNCGCIPSK 464176



 Score = 28.5 bits (62), Expect = 3.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 105    VQNHIGSLNWGYRVALREKKVVYENAYG 132
              +QN+I  LN+ YR +L    V Y NA+G
Sbjct: 223850 IQNYIKMLNFSYRSSLLTSGVDYINAFG 223933


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 8,358,125
  Number of sequences in database:  8
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,029,574
Number of Sequences: 8
Number of extensions: 54406
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 60
length of query: 499
length of database: 2,786,041
effective HSP length: 95
effective length of query: 404
effective length of database: 2,785,281
effective search space: 1125253524
effective search space used: 1125253524
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)