TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1
         (499 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQY01000043.1| Phytophthora sojae strain P6497 Psojae_Cont43...   471   e-132
gb|AAQY01000617.1| Phytophthora sojae strain P6497 Psojae_Cont61...   243   6e-64
gb|AAQY01001998.1| Phytophthora sojae strain P6497 Psojae_Cont19...   134   5e-40
gb|AAQY01002037.1| Phytophthora sojae strain P6497 Psojae_Cont20...   154   3e-37
gb|AAQY01000099.1| Phytophthora sojae strain P6497 Psojae_Cont99...    51   5e-06
gb|AAQY01001753.1| Phytophthora sojae strain P6497 Psojae_Cont17...    33   1.5  
gb|AAQY01000963.1| Phytophthora sojae strain P6497 Psojae_Cont96...    33   1.5  
gb|AAQY01000802.1| Phytophthora sojae strain P6497 Psojae_Cont80...    31   4.5  

>gb|AAQY01000043.1| Phytophthora sojae strain P6497 Psojae_Cont43, whole genome shotgun
             sequence
          Length = 119705

 Score =  471 bits (1212), Expect = e-132
 Identities = 255/505 (50%), Positives = 328/505 (64%), Gaps = 10/505 (1%)
 Frame = -1

Query: 5     EDLPKSYDYDLIIIXXXXXXXXXXXXXXXXXXXVMVLDFVTPTPLGTRWGLGGTCVNVGC 64
             ++   SYDYDL++I                   V VLD+V P+P GT WGLGGTCVNVGC
Sbjct: 87449 DEAETSYDYDLVVIGGGSGGLACSKEAASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGC 87270

Query: 65    IPKKLMHQAALLGQALQ-DSRNYGWKVEET----VKHDWDRMIEAVQNHIGSLNWGYRVA 119
             IPKKLMHQ++L+G+ +  DS N+GW +           W +++  V  +I  +N+ Y+V 
Sbjct: 87269 IPKKLMHQSSLIGELMHHDSANFGWNIASADGSASTFSWKQLVANVDGYIRGINFKYKVE 87090

Query: 120   LREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS 179
             LR K V YEN  G F+  H ++  + +   K  +    +IA G RP+ L  PG  E+ IS
Sbjct: 87089 LRSKYVKYENFLGSFVDAHTLELWHPRKGTKQITTRDVVIAVGGRPKELTCPGG-EHAIS 86913

Query: 180   SDDLFSLPYC-PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGE 238
             SDD+F +    PGKTLVVGASYVALECAGFL G+G DV VMVRSILLRGFDQDMANKIGE
Sbjct: 86912 SDDIFWMKKKEPGKTLVVGASYVALECAGFLKGMGYDVKVMVRSILLRGFDQDMANKIGE 86733

Query: 239   HME-EHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT 297
             +ME + GI+FIR+ VP  + ++E G      +V  +T   E  E  ++TV+ A GRD   
Sbjct: 86732 YMEVQSGIEFIRKTVPQSITKLENGQ----LLVKWTTEDGESCEEAFDTVLNATGRDPDV 86565

Query: 298   RKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRL 357
              K+GL+   VK+NEKTG+I V + EQT+ P IYAIGD++ D  ELTPVAIQAGRLL++RL
Sbjct: 86564 AKLGLDKARVKLNEKTGRIWVKN-EQTSTPNIYAIGDVI-DAPELTPVAIQAGRLLSRRL 86391

Query: 358   YAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD 417
             Y  ST + DY+ + T VFTP+EYG CGLSEE + E++GE+NIEVYH  F PLEW++    
Sbjct: 86390 YNNSTAQMDYDKICTAVFTPIEYGCCGLSEEDSKERYGEDNIEVYHKNFVPLEWSLSEET 86211

Query: 418   N---NKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPV 474
                   CY K+IC+   ++ VVGFH LGPNAGEVTQ    A+K G T  Q+  T+GIHP 
Sbjct: 86210 RTAAESCYLKVICDKTRDKFVVGFHYLGPNAGEVTQAMGLAMKLGFTYDQMVDTVGIHPT 86031

Query: 475   CAEVFTTLSVTKRSGASILQAGCUG 499
              AE FTTL +TK SG +    GC G
Sbjct: 86030 TAETFTTLEITKSSGGTTTGGGC*G 85956


>gb|AAQY01000617.1| Phytophthora sojae strain P6497 Psojae_Cont617, whole genome shotgun
              sequence
          Length = 168829

 Score =  243 bits (620), Expect = 6e-64
 Identities = 154/436 (35%), Positives = 228/436 (52%), Gaps = 6/436 (1%)
 Frame = -2

Query: 54     GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVE----ETVKHDWDRMIEAVQNHI 109
              GLGGTCVN GC+PKK+M  AA   + L  +++Y         E    DW  M      +I
Sbjct: 126780 GLGGTCVNFGCVPKKVMFNAAAHVEHLARNKDYSINTAAKDFEFGDFDWANMKTKRDAYI 126601

Query: 110    GSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLG 169
                LN  Y   L   +V +     + +   +++        K+++ +  L+A G  P    
Sbjct: 126600 KRLNGIYERNLGNAQVDHVQGIAKLVAKDKVEVAG-----KVFTGKHVLVAPGGVPSVPD 126436

Query: 170    IPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGF 228
              +PG  E+ I SD  F L   P K  VVGA Y+A+E AG    +  D T+  R   +LR F
Sbjct: 126435 LPG-MEHVIDSDGFFKLEQQPKKVAVVGAGYIAVEMAGIFNVLKSDTTLFCRFDQVLRKF 126259

Query: 229    DQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVM 288
              D  + + + E ME+ G+KF+R    ++  ++E    G+L  V  + N EE    +++ ++
Sbjct: 126258 DPIVRDLVNEEMEKAGVKFVRN---MRAARVEKQADGKLTFVV-TINGEEHKFPDFDAIL 126091

Query: 289    LAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQ 348
               A+GR+  T+ +GLE VGVK++E  G I V  +E T+VP +YAIGD      ELTPVAI 
Sbjct: 126090 YAVGREPRTKDLGLEEVGVKLSEG-GFIEVDAQENTSVPGVYAIGDATITGWELTPVAIA 125914

Query: 349    AGRLLAQRLYAGSTVKC-DYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFW 407
              AGR L+ RL+ G    C +Y  +PT +F+    G  G +E +AV K+GEEN++ Y S F 
Sbjct: 125913 AGRRLSDRLFGGEKDACLNYHQIPTVIFSHPPIGTIGYTEPEAVAKYGEENVKCYTSKFV 125734

Query: 408    PLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDS 467
               L  ++   +     A  +    + E VVG HV G  A E+ QGF  A+K   TK   D+
Sbjct: 125733 NLLHSMADPERKGKTAMKLVTVGEQETVVGVHVAGEGADEMIQGFGVAVKMNATKADFDN 125554

Query: 468    TIGIHPVCAEVFTTLS 483
               + IHP  AE   T++
Sbjct: 125553 IVAIHPTAAEELVTMA 125506


>gb|AAQY01001998.1| Phytophthora sojae strain P6497 Psojae_Cont1998, whole genome shotgun
             sequence
          Length = 39137

 Score =  134 bits (336), Expect(2) = 5e-40
 Identities = 94/270 (34%), Positives = 137/270 (50%), Gaps = 10/270 (3%)
 Frame = -3

Query: 230   QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVML 289
             +D   K G H+  H           +VE+ + GT    + +  +  SE      Y+ V+ 
Sbjct: 18996 EDAMAKDGVHLRPHSNI-------ARVEKADDGT----KTLVLADGSEY---SGYDVVIY 18859

Query: 290   AIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQA 349
             A GR   T  + L+  GV   +K G I V + ++T+   + A+GD+      LTPVAI A
Sbjct: 18858 AAGRVPLTSNLQLDKAGVD-TDKNGFIQVNEFQETSNSKVLAVGDVCGTPA-LTPVAIAA 18685

Query: 350   GRLLAQRLYAG-STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWP 408
             GR L+ RL+ G    K  YEN+PT VF+    G  GL+EE+A  K+G++ I+VY S F  
Sbjct: 18684 GRRLSDRLFGGMKDAKVSYENIPTVVFSHPPIGTIGLTEEQARRKYGDDEIKVYTSRFVN 18505

Query: 409   L---------EWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCG 459
             +         E T   +D  K   K++C  K+ E+VVG H++G  A E+ QGF  A+K G
Sbjct: 18504 MYYGLINEMDEATGEPKDKPKTAMKLVCAGKE-EKVVGLHMIGMAADEILQGFGVAVKMG 18328

Query: 460   LTKKQLDSTIGIHPVCAEVFTTLSVTKRSG 489
              TK   D+ + IHP   E   TL+    SG
Sbjct: 18327 ATKADFDNCVAIHPTAGEELVTLAPWGLSG 18238



 Score = 51.2 bits (121), Expect(2) = 5e-40
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = -2

Query: 174   KEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LLRGFD 229
             KE CI SD  F L   P K  VVGA Y+A+E AG L  +G D ++  R   +LR FD
Sbjct: 19258 KELCIDSDGFFELETLPKKVAVVGAGYIAVELAGVLNALGSDTSIFCRKEGVLRSFD 19088



 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
 Frame = -3

Query: 55    LGGTCVNVGCIPKKLMHQAALLGQAL-QDSRNYGWKVEETVKH-------DWDRMIEAVQ 106
             LGGTCVNVGC+PKKLM  AA +   L  D  +YG++ EET  H       DW ++     
Sbjct: 19797 LGGTCVNVGCVPKKLMFIAADMSHKLHHDFLHYGFEDEETGGHLGQRTHFDWPKLKARRD 19618

Query: 107   NHIGSLN-----WG 115
              ++  LN     WG
Sbjct: 19617 AYVLRLNGIYERWG 19576


>gb|AAQY01002037.1| Phytophthora sojae strain P6497 Psojae_Cont2037, whole genome shotgun
            sequence
          Length = 20229

 Score =  154 bits (390), Expect = 3e-37
 Identities = 123/437 (28%), Positives = 213/437 (48%), Gaps = 8/437 (1%)
 Frame = +1

Query: 51   TRWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHI 109
            +R  LGGTC+NVGCIP K L+H   LL  A  D ++YG    E VK ++ +M++A +  +
Sbjct: 2755 SRGKLGGTCLNVGCIPSKALLHSTHLLHTAQHDFKSYGIDAPE-VKANFPQMMKAKEKAV 2931

Query: 110  GSLNWGYRVALREKKVVYENAYGQFI--GPHRIKATNNKGKEKIYSAERFLIATGERPRY 167
             +L  G     ++ KV Y   +G+    G   +   +NKG E +  A+  +IATG     
Sbjct: 2932 KTLTGGIESLFKKNKVTYIKGFGKVSAQGEVSVALNDNKGNETV-KAKNIIIATGSEVTP 3108

Query: 168  LG-IPGDKEY--CISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSI 223
            L  +P D E    I S    SL   P   +VVGA  + LE       +G  VTV+  +  
Sbjct: 3109 LPPVPVDNEAGKIIDSTGALSLKRVPEHLVVVGAGVIGLELGSVYKRLGSKVTVVEFQDA 3288

Query: 224  LLRGFDQDMANKIGEHMEEHGIKFIRQF-VPIKVEQIEAGTPGRLRVVAQSTNSEEIIEG 282
               G D++   +  + +++ G++F  QF   +   ++       +++  + +   +    
Sbjct: 3289 ACPGMDKESVKEFTKLLKKQGLEF--QFGTKVTASEVNGDV---VKLTTEPSKGGDASTI 3453

Query: 283  EYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVEL 342
            E +TV++A GR A T  +GLE +G++  +K G+I V D  +T VP I+AIGD+++  + L
Sbjct: 3454 ECDTVLVATGRRAFTAGLGLEQMGIQ-TDKLGRIEVDDAFRTQVPGIFAIGDVIKGAM-L 3627

Query: 343  TPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVY 402
               A + G    + + AG     +Y  +P  ++T  E+ + G +EE+   +  E N+  +
Sbjct: 3628 AHKAEEEGVACVENI-AGKHGHVNYGAIPGVIYTFPEFASVGKTEEELKAEGIEYNVGKF 3804

Query: 403  HSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTK 462
                     T+   D      K++ + K  ++++G H++  NAGE+       ++ G   
Sbjct: 3805 PMMANSRARTVAESDG---LVKVLADKK-TDKLLGVHIIASNAGEMIAEGVIGIEYGAAS 3972

Query: 463  KQLDSTIGIHPVCAEVF 479
            + L  T   HP  +E F
Sbjct: 3973 EDLARTCHAHPTLSEAF 4023


>gb|AAQY01000099.1| Phytophthora sojae strain P6497 Psojae_Cont99, whole genome shotgun
              sequence
          Length = 300930

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 57/232 (24%), Positives = 91/232 (39%), Gaps = 20/232 (8%)
 Frame = +3

Query: 8      PKSYDYDLIIIXXXXXXXXXXXXXXXXXXXVMVLDFVTPTPLGTRWGLGGTCVNVGCIPK 67
              P+   YDL++I                   V ++D  T         LGG CV+ G IP 
Sbjct: 138339 PQVAAYDLVVIGSGPSATQCALESAKRGKKVAIVDKKT--------SLGGVCVHTGTIPS 138494

Query: 68     KLMHQAALLGQALQDSRNYG--WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV 125
              K   +A L     +    YG  + ++     D   ++  VQ  + S     R  L+  +V
Sbjct: 138495 KTFREAVLHLSGYRHHGFYGKSYSMKTVTIED---ILYRVQRVVRSEEDVVRAQLKAARV 138665

Query: 126    VYENAYGQFIGPHRIKATNNKGKEKIYS--------------AERFLIATGERPRYLG-I 170
                   + +F   H I    ++   K  S              A++FLIA G RP +   +
Sbjct: 138666 DVIPGFARFESEHEISVVRDEADAKRSSSNSSSNLDSLSRVMADKFLIACGTRPAHNPLV 138845

Query: 171    PGDKEYCISSDDLFS--LPYCPGKTLVVGASYVALECAGFLAGI-GLDVTVM 219
              P D +  I SD + S  +   P   +V+GA  + +E A  +  + G  VTV+
Sbjct: 138846 PIDGKVIIDSDQILSRDMHQLPRSLIVMGAGVIGMEYASMVNVVPGHSVTVV 139001


>gb|AAQY01001753.1| Phytophthora sojae strain P6497 Psojae_Cont1753, whole genome shotgun
            sequence
          Length = 1637

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = -1

Query: 155  ERFLIATGERPRYLGIPG-DKEYCISSDDLFSLPYCPGKTL-VVGASYVALECAGFLAGI 212
            ++ +IATG  PR L IPG D    +S  D+       GK + V+GA  +  + A F+  +
Sbjct: 1556 DKVVIATGVLPRELKIPGADHPKVLSYIDVLKNKAPVGKKVAVIGAGGIGFDVAEFITHV 1377

Query: 213  GLDVTVMVRSILLRGFDQDMANKI 236
            G   +  V     R +  DM N +
Sbjct: 1376 GESTSSSV-DAFAREWGIDMTNSV 1308


>gb|AAQY01000963.1| Phytophthora sojae strain P6497 Psojae_Cont963, whole genome shotgun
            sequence
          Length = 168448

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +3

Query: 155  ERFLIATGERPRYLGIPG-DKEYCISSDDLFSLPYCPGKTL-VVGASYVALECAGFLAGI 212
            ++ +IATG  PR L IPG D    +S  D+       GK + V+GA  +  + A F+  +
Sbjct: 2871 DKVVIATGVLPRELKIPGADHPKVLSYIDVLKNKAPVGKKVAVIGAGGIGFDVAEFITHV 3050

Query: 213  GLDVTVMVRSILLRGFDQDMANKI 236
            G   +  V     R +  DM N +
Sbjct: 3051 GESTSSSV-DAFAREWGIDMTNSV 3119


>gb|AAQY01000802.1| Phytophthora sojae strain P6497 Psojae_Cont802, whole genome shotgun
             sequence
          Length = 227799

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +1

Query: 247   FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVG 306
             FI+ ++P   E       G LR V        +++GE +  +L+IGR   +R I + TVG
Sbjct: 71092 FIKTYLPTLCET------GSLRCVVS------VVDGESDVSLLSIGRPR*SRSIRVRTVG 71235

Query: 307   VKINEKTGKIPV 318
                +E+   +P+
Sbjct: 71236 SGASERGFPVPM 71271


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,675,409
Number of Sequences: 5578
Number of extensions: 678536
Number of successful extensions: 3052
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 2386
Number of HSP's gapped (non-prelim): 1351
length of query: 499
length of database: 26,017,032
effective HSP length: 111
effective length of query: 388
effective length of database: 25,397,874
effective search space: 9854375112
effective search space used: 9854375112
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
