TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1 #anophagefferens # scaffold_11:subseq(783554,7436).pep  
         (488 letters)

Database: genome.fa 
           572 sequences; 14,903,514 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQX01000152.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    52   6e-07
gb|AAQX01000431.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    37   0.021
gb|AAQX01000513.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    32   0.39 
gb|AAQX01000284.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    32   0.66 
gb|AAQX01000325.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    31   0.87 
gb|AAQX01000560.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    31   1.1  
gb|AAQX01000369.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    31   1.1  
gb|AAQX01000368.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    31   1.1  
gb|AAQX01000382.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    29   3.3  
gb|AAQX01000508.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    28   5.6  
gb|AAQX01000450.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    28   5.6  
gb|AAQX01000208.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    28   5.6  
gb|AAQX01000503.1| Phytophthora ramorum strain Pr102 Pramorum_Co...    28   9.6  

>gb|AAQX01000152.1| Phytophthora ramorum strain Pr102 Pramorum_Cont152, whole genome
             shotgun sequence
          Length = 144054

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 87/373 (23%), Positives = 147/373 (39%), Gaps = 48/373 (12%)
 Frame = -2

Query: 144   VTAARFIVAVGGRPNKL-GCP-GGEHAIDSDDLF--SLPKAPGRVLCVGGGYIALECGGF 199
             +TA +F+V VG RP +    P  GE   DSD L    +   P R++ VG G + +E    
Sbjct: 52442 LTADKFLVCVGTRPARHPDIPFDGETIFDSDQLLWGKVKTVPRRLIVVGAGVVGMEYASM 52263

Query: 200   TAGMGYPTTCMV--RSILLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEKDAATGVLT 257
                +      ++  R  +L   D+E    +   +   G +     T   +EK A  G + 
Sbjct: 52262 MTIIPGTDVTVIDGRKEILNMADKEVSEGLCYSMAQTGTRFLTEETIKSVEK-ADNGEIF 52086

Query: 258   VTDSGGGVHEYDTVLVATGRYADTAALGIDNVPGASANVNAKTKKLECVDEQLP-GAPHV 316
             V    G     D +L   GR  +   L ++ V G + +   + K    VD      APH+
Sbjct: 52085 VHLESGKTVVGDGLLYTVGRQGNVEGLNLEAV-GLAPDKRGRIK----VDNNFQTAAPHM 51921

Query: 317   Y------------------------AIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPM 352
             Y                        A GD++ G P L   ++E G RLA  +    ++P+
Sbjct: 51920 YVMVLSEQQVKR*TETHVFVFLGSYAAGDII-GFPGLASTSMEQG-RLAS-VHMRTSKPL 51750

Query: 353   DYECVATT--------IFTPLEYGTI---GLSEDDAKAQLGECNVESYISEFAPLEYALS 401
             + + ++          + T +  G +   G+      + +G+ N +    E  P E  ++
Sbjct: 51749 NNQVLSDDKKMDDPDRVRTRMRSGEVFPFGIYTVPEISMVGK-NEQQLTKEQTPYEVGMA 51573

Query: 402   E----TRSERGDGC--FAKLVVDKSTGKVVGFHYLGPNAGEITQGFSIAMRKGATYADFI 455
                   R +   G   F K++    T K++G H +G  A EI     + M  G     F 
Sbjct: 51572 RYEELARGQMLGGVPGFLKIIFCPDTLKILGVHAIGEGATEIIHIGQVVMSTGGNLEYFR 51393

Query: 456   STVGIHPTVAEEF 468
             + V  +PT+AE +
Sbjct: 51392 NAVFNYPTLAEAY 51354



 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -3

Query: 4     YDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKL 60
             +D++V+G G  G  C+ + AK G  VA++D            LGG CV+ G +P K+
Sbjct: 53023 FDLIVIGSGPAGQKCAIDSAKHGKSVAIID--------KRDMLGGVCVHTGTVPSKV 52877


>gb|AAQX01000431.1| Phytophthora ramorum strain Pr102 Pramorum_Cont431, whole genome
             shotgun sequence
          Length = 16794

 Score = 36.6 bits (83), Expect = 0.021
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 3     DYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVG 54
             +YD VVVG G  GL  +  CA+ G K A +  + P+ + +    GG    +G
Sbjct: 16441 EYDAVVVGAGGAGLRAAMGCAEAGLKTACISKLFPTRSHTVAAQGGINAALG 16286


>gb|AAQX01000513.1| Phytophthora ramorum strain Pr102 Pramorum_Cont513, whole genome
             shotgun sequence
          Length = 45047

 Score = 32.3 bits (72), Expect = 0.39
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +2

Query: 179   KAPGRVLCVGGGYIALECGGFTAGMG----YPTTCMVRSILLRGFDRECVGKI 227
             + P  +LC GG  +   CG F  G+     Y TTC+V + L +    E  G++
Sbjct: 14951 RKPVHLLCTGGSKVLQSCGKFLLGIRCSSYYLTTCVVHACLAQSDACEAGGRL 15109


>gb|AAQX01000284.1| Phytophthora ramorum strain Pr102 Pramorum_Cont284, whole genome
             shotgun sequence
          Length = 83114

 Score = 31.6 bits (70), Expect = 0.66
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -1

Query: 4     YDVVVVGGGSGGLACSKECAKLGAKVAVL---DFVKPSPAGST 43
             +DV+V+GGG+ G  C+ + A  G   AV+   DF   +   ST
Sbjct: 40133 FDVLVIGGGATGSGCALDAATRGLNTAVVEGSDFASGTSGRST 40005


>gb|AAQX01000325.1| Phytophthora ramorum strain Pr102 Pramorum_Cont325, whole genome
             shotgun sequence
          Length = 240192

 Score = 31.2 bits (69), Expect = 0.87
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
 Frame = -2

Query: 1     GFDYD---VVVVGGGSG-GLACSKECAKLGAKVAVL 32
             GF  D   V + GG SG GLA +K+ AK GAKV+++
Sbjct: 97943 GFHVDGKHVFITGGSSGIGLAAAKQYAKEGAKVSII 97836



 Score = 28.1 bits (61), Expect = 7.4
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +1

Query: 4     YDVVVVGGGSGG--LACSKECAKL--GAKVAVLDFVKPSPA 40
             YDVVVVGGG  G  LAC  + + +  G  VAV++   P  A
Sbjct: 57070 YDVVVVGGGLVGSALACQLKSSPVFKGKNVAVIEPSNPPVA 57192


>gb|AAQX01000560.1| Phytophthora ramorum strain Pr102 Pramorum_Cont560, whole genome
             shotgun sequence
          Length = 84783

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 3     DYDVVVVGGGSGGLACSKE-CAKLGAKVAVLDFVKPSPAGSTW 44
             D   V  GGGSGG A     CA+L  K+ V+   + +P  STW
Sbjct: 15101 DAPKVFQGGGSGGPAAPYSGCARLSTKLWVVVQGRAAPRASTW 14973


>gb|AAQX01000369.1| Phytophthora ramorum strain Pr102 Pramorum_Cont369, whole genome
             shotgun sequence
          Length = 100296

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 234   HGVQLQVGVTPAKIEKDAATGVLTVTDSGG---GVHEYDTVLVATGRYAD 280
             HGV+L  GVT  + ++DA      +   GG   G+H    VLV  G   D
Sbjct: 84354 HGVRLGHGVTTKRADRDAVAAAARIPREGGVVAGLHGEAVVLVVHGAPRD 84205


>gb|AAQX01000368.1| Phytophthora ramorum strain Pr102 Pramorum_Cont368, whole genome
             shotgun sequence
          Length = 218554

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 5/141 (3%)
 Frame = -1

Query: 291   GASANVNAKTKKLECVDEQLPGAPHVYAIGDVV--EGRPELTPVAIEAGLRLARRLFGGK 348
             GA A + A  +    VDE  PGAP V  +GD +  EG   LT  +++A   LA  L    
Sbjct: 91672 GAPAVLAAVEEDALVVDEVEPGAPLVTLVGDALADEGSLVLTTDSLDAPAGLAEPLTAAM 91493

Query: 349   TEPMDYECVATTIFTPLEYGT---IGLSEDDAKAQLGECNVESYISEFAPLEYALSETRS 405
                  + C A +       G+      +E  + A LG C   + +     LE  L +  +
Sbjct: 91492 ELCTAWSCSARSCAYCW*DGS*LKACAAEASSAAGLGSCGCMARV-----LELLLVDWDA 91328

Query: 406   ERGDGCFAKLVVDKSTGKVVG 426
             E  D    KL       K++G
Sbjct: 91327 EDEDVEAIKLTASAPAEKILG 91265



 Score = 28.1 bits (61), Expect = 7.4
 Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 1/174 (0%)
 Frame = +3

Query: 244   PAKIEKDAATGVLTVTDSGGGVHEYDTVLVATGRYADTAALG-IDNVPGASANVNAKTKK 302
             PA  E+ AA       ++   + +Y T     GR    A  G +   P A        K 
Sbjct: 84240 PATKEELAAAKTTAALEA---LEQYSTQTGTLGRVGLIATTGFVSQSPSALVEGVTAAKL 84410

Query: 303   LECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATTIF 362
              E   + L   P V AIG +    P +  VA +  L+   +      E   Y  +A   F
Sbjct: 84411 QELAQKALKATPSVAAIGKL-SAVPHVDAVANK--LQ*TTKTID--QE*GTYISLALGAF 84575

Query: 363   TPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLV 416
                    +G+S D+ + + G  +VE+       LE     T   RG+GC   LV
Sbjct: 84576 GDAR*SDLGVSADE-QDKTGALDVEAAQRRGRNLELGRGHTTLARGEGCSDTLV 84734


>gb|AAQX01000382.1| Phytophthora ramorum strain Pr102 Pramorum_Cont382, whole genome
             shotgun sequence
          Length = 61095

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 4     YDVVVVGGGSGGLACSKECAKLGAKVAVLD 33
             YDVVVVG G  G A +   AK G +V +L+
Sbjct: 46062 YDVVVVGAGLMGSAAAYYAAKEGKRVLLLE 45973


>gb|AAQX01000508.1| Phytophthora ramorum strain Pr102 Pramorum_Cont508, whole genome
             shotgun sequence
          Length = 42575

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = -3

Query: 130   NTISLTDKKGNKTSV----TAARFIVAVGGRPNKLGCPGGEHAIDSDDLFSLPKAPG--- 182
             + ++L    GN++ +    T +RF  +  G+P K  C GG  A D   L      PG   
Sbjct: 28266 SALALFPCSGNRSWIDTYPTPSRFHHSSAGKPRKGRCAGGASARDFFQLAGASNRPGYGQ 28087

Query: 183   RVLCVGGGYIALECGG 198
             + + +    + L CGG
Sbjct: 28086 QKVSIPMREVELACGG 28039


>gb|AAQX01000450.1| Phytophthora ramorum strain Pr102 Pramorum_Cont450, whole genome
             shotgun sequence
          Length = 63092

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 4     YDVVVVGGGSGGLACSKECAKLGAKVA 30
             YD+VV+G G     C+ E AK G  V+
Sbjct: 13632 YDLVVIGSGPSATQCALESAKQGKHVS 13712


>gb|AAQX01000208.1| Phytophthora ramorum strain Pr102 Pramorum_Cont208, whole genome
            shotgun sequence
          Length = 119922

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 19   SKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHTASII 67
            +K C+    +V  +  +   P  S+ GL       GC+P+KL H A+ +
Sbjct: 8496 TK*CSTRAMEVLAVPGISKDPQTSSRGLQSCSNKRGCVPRKL*HCAASV 8350


>gb|AAQX01000503.1| Phytophthora ramorum strain Pr102 Pramorum_Cont503, whole genome
            shotgun sequence
          Length = 23397

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +1

Query: 221  RECVGKIEAHIKHHGVQLQVGVTPAKIEKDAATG----VLTVTDSGGGVHEYDTVLVATG 276
            R CVG+ +   +H G+ L++G+  ++       G    V+   D+ G V E+DT     G
Sbjct: 7720 RLCVGRADG--RHAGLVLRLGLAGSRGAAGRICGARHVVVPAGDAVGAVLEHDTHGKVRG 7893

Query: 277  RYADTAALG 285
            R     ALG
Sbjct: 7894 RAVHHGALG 7920


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:07 PM
  Number of letters in database: 14,903,514
  Number of sequences in database:  572
  
Lambda     K      H
   0.317    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,994,996
Number of Sequences: 572
Number of extensions: 152244
Number of successful extensions: 741
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 283
length of query: 488
length of database: 4,967,838
effective HSP length: 99
effective length of query: 389
effective length of database: 4,911,210
effective search space: 1910460690
effective search space used: 1910460690
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
