TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239865386|gb|EEQ98084.1| Thioredoxin reductase, putative
[Perkinsus marinus ATCC 50983]
         (554 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01000096.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...   240   0.0  
gb|AAXJ01019173.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...   213   4e-91
gb|AAXJ01000419.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...   152   2e-36
gb|AAXJ01000406.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    75   1e-18
gb|AAXJ01017801.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    63   1e-12
gb|AAXJ01019255.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    67   1e-10
gb|AAXJ01005136.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    60   8e-09
gb|AAXJ01013791.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    33   1.8  
gb|AAXJ01002519.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    33   1.8  
gb|AAXJ01001100.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    33   1.8  
gb|AAXJ01001007.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    33   1.8  
gb|AAXJ01000010.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    32   2.3  

>gb|AAXJ01000096.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296754064,
             whole genome shotgun sequence
          Length = 66714

 Score =  240 bits (612), Expect(4) = 0.0
 Identities = 129/195 (66%), Positives = 139/195 (71%), Gaps = 35/195 (17%)
 Frame = -2

Query: 361   GTPCVYAVGDVLKGKPELTPVAVKDGELLADRLFGGKTKLMDYSGIPTTVFTPAEYSHVG 420
             GTPCVYAVGDVLKGKPELTPVAVKDGELLADRLFGGKTKLMDYSGIPTTVFTPAEYSHVG
Sbjct: 18386 GTPCVYAVGDVLKGKPELTPVAVKDGELLADRLFGGKTKLMDYSGIPTTVFTPAEYSHVG 18207

Query: 421   MSEEEA------------LKEYR--------QDEIECYMYSWGSLELSVTHRPKV----- 455
             MSEEE             +  +R        +    C +    S    +  R ++     
Sbjct: 18206 MSEEEVRTNMSSIHP*SMIDNFRL*RSIVKMK*SATCIVGDPSSYL*PIGRRSRLLW*YH 18027

Query: 456   ----------PSAMANEFDEEMSPNCMCKIVVHEPDEKVLGFHYIGPAAGEVIHGFAIAF 505
                       PSA ANEFDEEMSPNCMCKIVVHEPDEKVLGFHYIGPAAGEVIHGFAIAF
Sbjct: 18026 PYSAYLFSMAPSAQANEFDEEMSPNCMCKIVVHEPDEKVLGFHYIGPAAGEVIHGFAIAF 17847

Query: 506   KMGLTKAQIEDIVGV 520
             KMGLTKAQIED++ +
Sbjct: 17846 KMGLTKAQIEDVIAI 17802



 Score =  174 bits (441), Expect(4) = 0.0
 Identities = 101/194 (52%), Positives = 115/194 (59%), Gaps = 49/194 (25%)
 Frame = -1

Query: 69    TLLCDFVSPSITRGTKWGLGGTCVNVGCIPKKLMHYTGTLE------------------- 109
             TLLCDFVSPSITRGTKWGLGGTCVNVGCIPKKLMHYTGTLE                   
Sbjct: 19566 TLLCDFVSPSITRGTKWGLGGTCVNVGCIPKKLMHYTGTLEGMYLHK*SSDVIVIVRPIT 19387

Query: 110   -----GQLRDAKQ--------------LGYTEI-----------PEKKAGDHYQHDWNTM 139
                  G   D ++               G+T++           PE++ G  +   W+  
Sbjct: 19386 *CQATGLY*DPREEGW*SLST*LEHNGFGHTDVYQETQFHV*DRPEERRGQ-WPGSWDCC 19210

Query: 140   VSDIQMYIKKLNFMYRTGLRNGGVEYENAWGCFDPEAGPHTVKLTNKKGEVRTVTAKNVL 199
             +  + +Y++              VEYENAWGCFDPEAGPHTVKLTNKKGEVRTVTAKNVL
Sbjct: 19209 L--LLLYVQ--------------VEYENAWGCFDPEAGPHTVKLTNKKGEVRTVTAKNVL 19078

Query: 200   VATGGRPRILDIPG 213
             VATGGRPRILDIPG
Sbjct: 19077 VATGGRPRILDIPG 19036



 Score =  151 bits (381), Expect(4) = 0.0
 Identities = 77/81 (95%), Positives = 78/81 (96%)
 Frame = -3

Query: 286   GTKFLMESEPVSLTKEATEGSRIVVKFEDGTSDEYDTVLFATGRTPSTANLGLPSEAFAS 345
             GTKFLMESEPVSLTKEATEGSRIVVKFEDGTSDEYDTVLFATGRTPSTANLGLPSEAFAS
Sbjct: 18658 GTKFLMESEPVSLTKEATEGSRIVVKFEDGTSDEYDTVLFATGRTPSTANLGLPSEAFAS 18479

Query: 346   PTSAKLIVDEKNLVRGTPCVY 366
             PTSAKLIVDEKNLVRG   +Y
Sbjct: 18478 PTSAKLIVDEKNLVRGRMTLY 18416



 Score =  136 bits (342), Expect(4) = 0.0
 Identities = 73/92 (79%), Positives = 73/92 (79%), Gaps = 19/92 (20%)
 Frame = -2

Query: 214   AREYGITSDDLFSLHTPPGKTLVIGSRYIALEC-------------------AGFLTELG 254
             AREYGITSDDLFSLHTPPGKTLVIGSRYIALEC                   AGFLTELG
Sbjct: 18983 AREYGITSDDLFSLHTPPGKTLVIGSRYIALECKPLITIYL***YWVFSCPGAGFLTELG 18804

Query: 255   YDTTVSVRSDKVLKNFDQDMANKVKSVMQELG 286
             YDTTVSVRSDKVLKNFDQDMANKVKSVMQELG
Sbjct: 18803 YDTTVSVRSDKVLKNFDQDMANKVKSVMQELG 18708



 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 28/49 (57%), Positives = 29/49 (59%)
 Frame = -3

Query: 1     MVNGTASSFLRPXXXXXXXXXXXXXXXXXXXXWMSTAPPDHFDYDYVVL 49
             MVNGTASSFLRP                    WMSTAPPDHFDYDYV+L
Sbjct: 19951 MVNGTASSFLRPGLVAAAGPAAAAVAAGNSVAWMSTAPPDHFDYDYVIL 19805



 Score = 44.3 bits (103), Expect = 6e-04
 Identities = 21/32 (65%), Positives = 23/32 (71%)
 Frame = -3

Query: 504   AFKMGLTKAQIEDIVGVHPTDCEAVIQQMDIT 535
             +F   +T      IVGVHPTDCEAVIQQMDIT
Sbjct: 17797 SFNSSVTTIYPFQIVGVHPTDCEAVIQQMDIT 17702


>gb|AAXJ01019173.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296292342, whole genome shotgun sequence
          Length = 1026

 Score =  213 bits (542), Expect(3) = 4e-91
 Identities = 105/124 (84%), Positives = 106/124 (85%), Gaps = 17/124 (13%)
 Frame = -2

Query: 107 TLEGQLRDAKQLGYTEIPEKKAGDHYQHDWNTMVSDIQMYIKKLNFMYRTGLRNGG---- 162
           +L GQLRDAKQLGYTEIPEKKAGDHYQHDWNTMVSDIQMYIKKLNFMYRTGLRNGG    
Sbjct: 527 SLSGQLRDAKQLGYTEIPEKKAGDHYQHDWNTMVSDIQMYIKKLNFMYRTGLRNGGVSGL 348

Query: 163 -------------VEYENAWGCFDPEAGPHTVKLTNKKGEVRTVTAKNVLVATGGRPRIL 209
                        VEYENAWGCFDPEAGPHTVKLTNKKGEVRTVTAKNVLVATGGRPRIL
Sbjct: 347 AVGIVVYYCCYVQVEYENAWGCFDPEAGPHTVKLTNKKGEVRTVTAKNVLVATGGRPRIL 168

Query: 210 DIPG 213
           DIPG
Sbjct: 167 DIPG 156



 Score = 95.1 bits (235), Expect(3) = 4e-91
 Identities = 42/42 (100%), Positives = 42/42 (100%)
 Frame = -1

Query: 69  TLLCDFVSPSITRGTKWGLGGTCVNVGCIPKKLMHYTGTLEG 110
           TLLCDFVSPSITRGTKWGLGGTCVNVGCIPKKLMHYTGTLEG
Sbjct: 699 TLLCDFVSPSITRGTKWGLGGTCVNVGCIPKKLMHYTGTLEG 574



 Score = 69.3 bits (168), Expect(3) = 4e-91
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = -3

Query: 214 AREYGITSDDLFSLHTPPGKTLVIGSRYIALEC 246
           ARE+GITSDDLFSLHTPPGKTLVIGSRYIALEC
Sbjct: 103 AREHGITSDDLFSLHTPPGKTLVIGSRYIALEC 5



 Score = 43.1 bits (100), Expect = 0.001
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = -3

Query: 33  WMSTAPPDHFDYDYVVL 49
           WMSTAPPDHFDYDYV+L
Sbjct: 988 WMSTAPPDHFDYDYVIL 938


>gb|AAXJ01000419.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296604260,
            whole genome shotgun sequence
          Length = 30057

 Score =  152 bits (384), Expect = 2e-36
 Identities = 86/208 (41%), Positives = 123/208 (59%), Gaps = 1/208 (0%)
 Frame = -1

Query: 320  YDTVLFATGRTPSTANLGLPSEAFA-SPTSAKLIVDEKNLVRGTPCVYAVGDVLKGKPEL 378
            +DTVL A GRT     L L +     +P   K+ VD+  +      +YA+GDV++G  EL
Sbjct: 1941 FDTVLMAVGRTGCAGWLSLDNAGVHYNPDKGKIPVDKFEMTN-IDNIYAIGDVVEGMLEL 1765

Query: 379  TPVAVKDGELLADRLFGGKTKLMDYSGIPTTVFTPAEYSHVGMSEEEALKEYRQDEIECY 438
            TPVA++ G++LA RLFGG ++LMDY  +PTTVFTP EY  VG SEE A +EY  D I  +
Sbjct: 1764 TPVAIQSGKMLAARLFGGASRLMDYHNVPTTVFTPIEYGSVGSSEENAKEEYGDDLIVYH 1585

Query: 439  MYSWGSLELSVTHRPKVPSAMANEFDEEMSPNCMCKIVVHEPDEKVLGFHYIGPAAGEVI 498
             +           +P + +   +  D +     +C+   ++ D+KV+G H +GP AGE+I
Sbjct: 1584 SF----------FKPLLWALNKDRGDADCYMKVLCE---NKGDKKVVGIHILGPDAGEMI 1444

Query: 499  HGFAIAFKMGLTKAQIEDIVGVHPTDCE 526
             G A+A K G TKA ++D VG+HPT  E
Sbjct: 1443 QGLAVAMKAGCTKANLDDTVGIHPTCAE 1360



 Score = 67.8 bits (164), Expect(4) = 3e-35
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
 Frame = -1

Query: 82   GTKWGLGGTCVNVGCIPKKLMHYTG----TLEGQLRDAKQL-GYTEIPEKKAGDHYQ--- 133
            GT WGLGGTCVNVGCIPKKL+H +     T  G L  +  + GY       AG  ++   
Sbjct: 2859 GTTWGLGGTCVNVGCIPKKLLHMSAHTAETAVGPLPLSSTIGGYMCC*GDSAGLGWELTA 2680

Query: 134  -HDWNTMVSDIQMYIKKLNFMYRTGLRNGGVE 164
             H+W  M+ ++  YI  LN+ Y++ LR+  V+
Sbjct: 2679 SHNWEAMIQNVTTYISSLNWGYKSELRSTNVK 2584



 Score = 61.2 bits (147), Expect(4) = 3e-35
 Identities = 31/58 (53%), Positives = 41/58 (70%)
 Frame = -2

Query: 241  YIALECAGFLTELGYDTTVSVRSDKVLKNFDQDMANKVKSVMQELGTKFLMESEPVSL 298
            YIALECAGF+   GYDTTV VRS  +L+ FDQDMA ++   M+  GTKF++ +   +L
Sbjct: 2237 YIALECAGFIAGFGYDTTVMVRS-ILLRGFDQDMAQRIGKYMELHGTKFVIHTSNSTL 2067



 Score = 57.8 bits (138), Expect(4) = 3e-35
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = -3

Query: 193  VTAKNVLVATGGRPRILDIPGAREYGITSDDLFSLHTPPGKTLVIGSR 240
            V  + +L+ATGGRP +   PGA E  ITSDD+F    PPGKTLV+G+R
Sbjct: 2422 VPLRYILIATGGRPNLGGYPGAGECCITSDDIFRRKAPPGKTLVVGAR 2279



 Score = 22.7 bits (47), Expect(4) = 3e-35
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 179  HTVKLTNKKGEVRTVTAK 196
            +T+KLT+K+G+   VTA+
Sbjct: 2504 NTLKLTDKRGKESIVTAR 2451


>gb|AAXJ01000406.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296547770,
            whole genome shotgun sequence
          Length = 30734

 Score = 75.1 bits (183), Expect = 3e-13
 Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 33/200 (16%)
 Frame = -2

Query: 363  PCVYAVGDVLKGKPELTPVAVKDGELLADRLFGG---KTKLMDYSGIPTTV--------- 410
            P VYAVGD + G  ELTPVA+  G  L+DRLFG    ++  M Y  +   +         
Sbjct: 9679 PRVYAVGDAV-GNFELTPVAIAAGRTLSDRLFGPFKVRSIRMSYYSLMLLLLLNRIQVTC 9503

Query: 411  ----------FTPAEYSHVGMSEEEALKEYRQDE-------IECYMY-SWGSLELSVT-H 451
                      F P     + +S++  LK  R          I+ + + S+  + +++  +
Sbjct: 9502 T*TMRLFLLWFLPIHRLVLVVSQK--LKPLRSMVRII*R*FIKLFSHHSYSIIIITIQIY 9329

Query: 452  RPKVPSAMANEFDEEMS--PNCMCKIVVHEPDEKVLGFHYIGPAAGEVIHGFAIAFKMGL 509
            R +  +     F  E S  P  + K++   P+EKV+G H IG AA E++ GFA+A +MG 
Sbjct: 9328 RSRFVNLYYGIFQVEPSDKPKTLVKVICTGPEEKVVGLHVIGMAADELLQGFAVAMRMGA 9149

Query: 510  TKAQIEDIVGVHPTDCEAVI 529
            TKA ++  V +HPT  E ++
Sbjct: 9148 TKADLDRTVAIHPTAGEEIV 9089



 Score = 62.8 bits (151), Expect(3) = 1e-18
 Identities = 26/61 (42%), Positives = 40/61 (65%)
 Frame = -2

Query: 469  PNCMCKIVVHEPDEKVLGFHYIGPAAGEVIHGFAIAFKMGLTKAQIEDIVGVHPTDCEAV 528
            P  + K++   P+EKV+G H IG  A E++ GFA+A +MG TKA ++  V +HPT  E +
Sbjct: 6718 PKTLVKVICTGPEEKVVGLHVIGMGADELLQGFAVAMRMGATKADLDRTVAIHPTAGEEI 6539

Query: 529  I 529
            +
Sbjct: 6538 V 6536



 Score = 60.5 bits (145), Expect = 8e-09
 Identities = 70/258 (27%), Positives = 98/258 (37%), Gaps = 70/258 (27%)
 Frame = -1

Query: 79    ITRGTKWGLGGTCVNVGCIPKK----------------LMHYTGTL-EGQLRDAKQLGYT 121
             I R     +GGTCVNVGC+PKK                L     T+ E  L DA   G+ 
Sbjct: 10880 IERDVDHMIGGTCVNVGCVPKKVVVII*LVISPIILP*LTWSAATMNETFLHDACHYGFQ 10701

Query: 122   EIPEKKAGDHYQHDWNTMVSDIQMYIKKLNFMYRTGLRNGGV--------EYENAWGCFD 173
                 + A      D+ T  +    Y+ +L  +Y+  L+N  V        E+ +    F 
Sbjct: 10700 TDEGRNAP---AMDYTTFKARRDKYLARLRGIYQNNLKNADVGPLGYHYCEHTHKCPLFR 10530

Query: 174   PE-AGPHTVKLTNKKGEVR-------------------------TVTAKNVLVATGGRPR 207
                + P  V L  +   +R                          +TA +VL+A GG+P 
Sbjct: 10529 LT*SVPLVVLLVMRVITIR*PSR*VVSLPLLLVRWYCH*LDDGKKLTAGHVLIACGGQPE 10350

Query: 208   ILDIPGAREYGITSDD-------------------LFSLHTPPGKTLVIGSRYIALECAG 248
               DI G +E+ I SD                     F L   P   +V G+ YIA+E AG
Sbjct: 10349 TPDIEG-KEFTIDSDGK*LHDCSLKHMKV**YRSGFFQLEKIPKSVVVAGAGYIAVELAG 10173

Query: 249   FLTELGYDTTVSVRSDKV 266
                  G DTT++VR  KV
Sbjct: 10172 IFNAFGADTTLTVRRHKV 10119



 Score = 50.4 bits (119), Expect = 8e-06
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
 Frame = -1

Query: 191  RTVTAKNVLVATGGRPRILDIPGAREYGITSDD-------------------LFSLHTPP 231
            + +TA +VL+A GG+P   DI G +E+ I SD                     F L   P
Sbjct: 7865 KKLTAGHVLIACGGQPETPDIEG-KEFVIDSDGE*LHDCSLKHMKV**YCSGFFQLEKIP 7689

Query: 232  GKTLVIGSRYIALECAGFLTELGYDTTVSVRSDKV 266
               +V G+ YIA+E AG     G DTT++VR  KV
Sbjct: 7688 KSVVVAGAGYIAVELAGIFNAFGADTTLTVRRHKV 7584



 Score = 40.0 bits (92), Expect(3) = 1e-18
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = -2

Query: 363  PCVYAVGDVLKGKPELTPVAVKDGELLADRLFG 395
            P VYAVGD + G  ELTPVA+  G  L+DRLFG
Sbjct: 7144 PRVYAVGDAV-GNFELTPVAIAAGRTLSDRLFG 7049



 Score = 33.9 bits (76), Expect = 0.81
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 79   ITRGTKWGLGGTCVNVGCIPKKLM 102
            I R     L GTCVNVGC+PKK++
Sbjct: 8350 IERDVDHMLAGTCVNVGCVPKKVV 8279



 Score = 30.4 bits (67), Expect(3) = 1e-18
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 401  MDYSGIPTTVFTPAEYSHVGMSEEEALKEYRQDEIE 436
            +DY  IPT VF        G++E +A+++Y +D ++
Sbjct: 6947 IDYETIPTVVFAHPPIGTCGLTEAQAVEKYGKDNLK 6840


>gb|AAXJ01017801.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296736556, whole genome shotgun sequence
          Length = 1059

 Score = 62.8 bits (151), Expect(2) = 1e-12
 Identities = 26/61 (42%), Positives = 40/61 (65%)
 Frame = +3

Query: 469 PNCMCKIVVHEPDEKVLGFHYIGPAAGEVIHGFAIAFKMGLTKAQIEDIVGVHPTDCEAV 528
           P  + K++   P+EKV+G H IG  A E++ GFA+A +MG TKA ++  V +HPT  E +
Sbjct: 252 PKTLVKVICTGPEEKVVGLHVIGMGADELLQGFAVAMRMGATKADLDRTVAIHPTAGEEI 431

Query: 529 I 529
           +
Sbjct: 432 V 434



 Score = 30.4 bits (67), Expect(2) = 1e-12
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 401 MDYSGIPTTVFTPAEYSHVGMSEEEALKEYRQDEIE 436
           +DY  IPT VF        G++E +A+++Y +D ++
Sbjct: 23  IDYETIPTVVFAHPPIGTCGLTEAQAVEKYGKDNLK 130


>gb|AAXJ01019255.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296581676, whole genome shotgun sequence
          Length = 1024

 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 33/189 (17%)
 Frame = +2

Query: 374 GKPELTPVAVKDGELLADRLFGG---KTKLMDYSGIPTTV-------------------F 411
           G  ELTPVA+  G  L+DRLFG    ++  M Y  +   +                   F
Sbjct: 8   GNFELTPVAIAAGRTLSDRLFGAFKVRSIRMSYYSLMLLLLLNRIQVTCT*TMRLFLLWF 187

Query: 412 TPAEYSHVGMSEEEALKEYRQDE-------IECYMY-SWGSLELSVT-HRPKVPSAMANE 462
            P     + +S++  LK  R          I+ + + S+  + +++  +R +  +     
Sbjct: 188 LPIHRLVLVVSQK--LKPLRSMVRII*R*FIKLFSHHSYSIIIITIQIYRSRFVNLYYGI 361

Query: 463 FDEEMS--PNCMCKIVVHEPDEKVLGFHYIGPAAGEVIHGFAIAFKMGLTKAQIEDIVGV 520
           F  E S  P  + K++   P+EKV+G H IG AA E++ GFA+A +MG TKA ++  V +
Sbjct: 362 FQVEPSDKPKTLVKVICTGPEEKVVGLHVIGMAADELLQGFAVAMRMGATKADLDRTVAI 541

Query: 521 HPTDCEAVI 529
           HPT  E ++
Sbjct: 542 HPTAGEEIV 568


>gb|AAXJ01005136.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296580090,
            whole genome shotgun sequence
          Length = 2889

 Score = 60.5 bits (145), Expect = 8e-09
 Identities = 27/31 (87%), Positives = 30/31 (96%)
 Frame = -2

Query: 490  IGPAAGEVIHGFAIAFKMGLTKAQIEDIVGV 520
            IGPAAGEVIHGFAIAFKMGLTKAQIED++ +
Sbjct: 2888 IGPAAGEVIHGFAIAFKMGLTKAQIEDVIAI 2796



 Score = 42.7 bits (99), Expect = 0.002
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = -3

Query: 504  AFKMGLTKAQIEDIVGVHPTDCEAVIQQMDIT 535
            +F   +T      IVGVHPTDCEAVIQQM+IT
Sbjct: 2791 SFNSSVTTMYSFQIVGVHPTDCEAVIQQMNIT 2696


>gb|AAXJ01013791.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296209730, whole genome shotgun sequence
          Length = 1249

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 13/18 (72%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
 Frame = -1

Query: 87  LGGTCVNVGCIPKK-LMH 103
           LGGTC+N+GCIP K L+H
Sbjct: 991 LGGTCLNIGCIPSKCLLH 938


>gb|AAXJ01002519.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296756158,
            whole genome shotgun sequence
          Length = 6125

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 13/18 (72%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
 Frame = +1

Query: 87   LGGTCVNVGCIPKK-LMH 103
            LGGTC+N+GCIP K L+H
Sbjct: 5221 LGGTCLNIGCIPSKCLLH 5274


>gb|AAXJ01001100.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296052137,
            whole genome shotgun sequence
          Length = 14471

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 13/18 (72%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
 Frame = +2

Query: 87   LGGTCVNVGCIPKK-LMH 103
            LGGTC+N+GCIP K L+H
Sbjct: 7721 LGGTCLNIGCIPSKCLLH 7774


>gb|AAXJ01001007.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296275150,
             whole genome shotgun sequence
          Length = 15716

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 13/18 (72%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
 Frame = +1

Query: 87    LGGTCVNVGCIPKK-LMH 103
             LGGTC+N+GCIP K L+H
Sbjct: 13477 LGGTCLNIGCIPSKCLLH 13530


>gb|AAXJ01000010.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296790968,
             whole genome shotgun sequence
          Length = 132190

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 219   ITSDDLFSLHTPPGKTLVIGSRYIALECAGFLTELGYDTTV 259
             I + D  +L  PPG  L+IGS +IA+E A  L   G D  +
Sbjct: 43005 ILARD*CTLPPPPG*VLIIGSGFIAMEMASALENKGVDIAI 42883


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.317    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,473,438
Number of Sequences: 23491
Number of extensions: 635357
Number of successful extensions: 3025
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 1195
Number of HSP's gapped (non-prelim): 2088
length of query: 554
length of database: 28,681,891
effective HSP length: 112
effective length of query: 442
effective length of database: 26,050,899
effective search space: 11514497358
effective search space used: 11514497358
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
