TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1
         (499 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01000419.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...   238   5e-90
gb|AAXJ01000096.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...   111   7e-36
gb|AAXJ01019173.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    75   1e-32
gb|AAXJ01000406.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    79   2e-14
gb|AAXJ01019255.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    69   3e-11
gb|AAXJ01017801.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    68   3e-11
gb|AAXJ01001100.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    40   0.013
gb|AAXJ01001007.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    40   0.013
gb|AAXJ01005136.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    39   0.017
gb|AAXJ01000014.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    34   0.54 
gb|AAXJ01013791.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    34   0.71 
gb|AAXJ01002519.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    34   0.71 
gb|AAXJ01005488.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    31   4.6  
gb|AAXJ01001026.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    30   7.8  

>gb|AAXJ01000419.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296604260,
            whole genome shotgun sequence
          Length = 30057

 Score =  238 bits (608), Expect(3) = 5e-90
 Identities = 123/254 (48%), Positives = 168/254 (66%), Gaps = 5/254 (1%)
 Frame = -1

Query: 248  IRQFVPIKVEQIEAGTPGRLRVVAQS---TNSEEIIE-GEYNTVMLAIGRDACTRKIGLE 303
            + + +P K E+ E    G++RV A+S   T S+   E G ++TV++A+GR  C   + L+
Sbjct: 2052 VHEMIPTKFEKTE---DGKVRVYAKSSSDTMSDADSEFGVFDTVLMAVGRTGCAGWLSLD 1882

Query: 304  TVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTV 363
              GV  N   GKIPV   E TN+  IYAIGD++E  +ELTPVAIQ+G++LA RL+ G++ 
Sbjct: 1881 NAGVHYNPDKGKIPVDKFEMTNIDNIYAIGDVVEGMLELTPVAIQSGKMLAARLFGGASR 1702

Query: 364  KCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTI-PSRDNNKCY 422
              DY NVPTTVFTP+EYG+ G SEE A E++G++ I VYHS+F PL W +   R +  CY
Sbjct: 1701 LMDYHNVPTTVFTPIEYGSVGSSEENAKEEYGDDLI-VYHSFFKPLLWALNKDRGDADCY 1525

Query: 423  AKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482
             K++C  K +++VVG H+LGP+AGE+ QG A A+K G TK  LD T+GIHP CAE FTTL
Sbjct: 1524 MKVLCENKGDKKVVGIHILGPDAGEMIQGLAVAMKAGCTKANLDDTVGIHPTCAETFTTL 1345

Query: 483  SVTKRSGASILQAG 496
            +  K  G      G
Sbjct: 1344 TQIKEDGQDATVGG 1303



 Score = 84.0 bits (206), Expect(3) = 5e-90
 Identities = 38/50 (76%), Positives = 44/50 (88%)
 Frame = -2

Query: 199  SYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFI 248
            SY+ALECAGF+AG G D TVMVRSILLRGFDQDMA +IG++ME HG KF+
Sbjct: 2240 SYIALECAGFIAGFGYDTTVMVRSILLRGFDQDMAQRIGKYMELHGTKFV 2091



 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 42/94 (44%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
 Frame = -1

Query: 49   LGTRWGLGGTCVNVGCIPKKLMHQAALLGQAL-----------------QDSRNYGWKVE 91
            +GT WGLGGTCVNVGCIPKKL+H +A   +                    DS   GW  E
Sbjct: 2862 IGTTWGLGGTCVNVGCIPKKLLHMSAHTAETAVGPLPLSSTIGGYMCC*GDSAGLGW--E 2689

Query: 92   ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKV 125
             T  H+W+ MI+ V  +I SLNWGY+  LR   V
Sbjct: 2688 LTASHNWEAMIQNVTTYISSLNWGYKSELRSTNV 2587



 Score = 51.2 bits (121), Expect(3) = 5e-90
 Identities = 30/58 (51%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
 Frame = -3

Query: 146  KGKEKIYS-----AERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGA 198
            +GK  IY+         LIATG RP   G PG  E CI+SDD+F     PGKTLVVGA
Sbjct: 2455 QGKRFIYTHG*VPLRYILIATGGRPNLGGYPGAGECCITSDDIFRRKAPPGKTLVVGA 2282


>gb|AAXJ01000096.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296754064,
             whole genome shotgun sequence
          Length = 66714

 Score =  111 bits (277), Expect = 3e-24
 Identities = 71/194 (36%), Positives = 91/194 (46%), Gaps = 49/194 (25%)
 Frame = -2

Query: 327   PYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLS 386
             P +YA+GD+L+ K ELTPVA++ G LLA RL+ G T   DY  +PTTVFTP EY   G+S
Sbjct: 18380 PCVYAVGDVLKGKPELTPVAVKDGELLADRLFGGKTKLMDYSGIPTTVFTPAEYSHVGMS 18201

Query: 387   EEKAVEKFGE-------ENIEV----------------------------------YHSY 405
             EE+              +N  +                                  YH Y
Sbjct: 18200 EEEVRTNMSSIHP*SMIDNFRL*RSIVKMK*SATCIVGDPSSYL*PIGRRSRLLW*YHPY 18021

Query: 406   FWPLEWTIPSRDNNK--------CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALK 457
                L    PS   N+        C  KI+ +  D E+V+GFH +GP AGEV  GFA A K
Sbjct: 18020 SAYLFSMAPSAQANEFDEEMSPNCMCKIVVHEPD-EKVLGFHYIGPAAGEVIHGFAIAFK 17844

Query: 458   CGLTKKQLDSTIGI 471
              GLTK Q++  I I
Sbjct: 17843 MGLTKAQIEDVIAI 17802



 Score = 95.5 bits (236), Expect(2) = 7e-36
 Identities = 69/178 (38%), Positives = 84/178 (47%), Gaps = 44/178 (24%)
 Frame = -1

Query: 39    MVLDFVTPT-PLGTRWGLGGTCVNVGCIPKKLMHQAALL-GQALQ--------------- 81
             ++ DFV+P+   GT+WGLGGTCVNVGCIPKKLMH    L G  L                
Sbjct: 19563 LLCDFVSPSITRGTKWGLGGTCVNVGCIPKKLMHYTGTLEGMYLHK*SSDVIVIVRPIT* 19384

Query: 82    --------DSRNYGW----------------KVEETVKHDWDRMIEAVQNHIGSLNWGYR 117
                     D R  GW                  +ET  H  DR  E      GS  W   
Sbjct: 19383 CQATGLY*DPREEGW*SLST*LEHNGFGHTDVYQETQFHV*DRPEERRGQWPGS--WDCC 19210

Query: 118   VALREKKVVYENAYGQF---IGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG 172
             + L   +V YENA+G F    GPH +K TN KG+ +  +A+  L+ATG RPR L IPG
Sbjct: 19209 LLLLYVQVEYENAWGCFDPEAGPHTVKLTNKKGEVRTVTAKNVLVATGGRPRILDIPG 19036



 Score = 75.9 bits (185), Expect(2) = 7e-36
 Identities = 45/91 (49%), Positives = 55/91 (60%), Gaps = 20/91 (21%)
 Frame = -2

Query: 174   KEYCISSDDLFSLPYCPGKTLVVGASYVALEC-------------------AGFLAGIGL 214
             +EY I+SDDLFSL   PGKTLV+G+ Y+ALEC                   AGFL  +G 
Sbjct: 18980 REYGITSDDLFSLHTPPGKTLVIGSRYIALECKPLITIYL***YWVFSCPGAGFLTELGY 18801

Query: 215   DVTVMVRS-ILLRGFDQDMANKIGEHMEEHG 244
             D TV VRS  +L+ FDQDMANK+   M+E G
Sbjct: 18800 DTTVSVRSDKVLKNFDQDMANKVKSVMQELG 18708


>gb|AAXJ01019173.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296292342, whole genome shotgun sequence
          Length = 1026

 Score = 74.7 bits (182), Expect(3) = 1e-32
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 26/130 (20%)
 Frame = -2

Query: 69  LMHQAALLGQALQDSRNYGW------KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALRE 122
           LM   +L GQ L+D++  G+      K  +  +HDW+ M+  +Q +I  LN+ YR  LR 
Sbjct: 542 LMLLLSLSGQ-LRDAKQLGYTEIPEKKAGDHYQHDWNTMVSDIQMYIKKLNFMYRTGLRN 366

Query: 123 K-----------------KVVYENAYGQF---IGPHRIKATNNKGKEKIYSAERFLIATG 162
                             +V YENA+G F    GPH +K TN KG+ +  +A+  L+ATG
Sbjct: 365 GGVSGLAVGIVVYYCCYVQVEYENAWGCFDPEAGPHTVKLTNKKGEVRTVTAKNVLVATG 186

Query: 163 ERPRYLGIPG 172
            RPR L IPG
Sbjct: 185 GRPRILDIPG 156



 Score = 58.9 bits (141), Expect(3) = 1e-32
 Identities = 26/39 (66%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
 Frame = -1

Query: 39  MVLDFVTPT-PLGTRWGLGGTCVNVGCIPKKLMHQAALL 76
           ++ DFV+P+   GT+WGLGGTCVNVGCIPKKLMH    L
Sbjct: 696 LLCDFVSPSITRGTKWGLGGTCVNVGCIPKKLMHYTGTL 580



 Score = 47.0 bits (110), Expect(3) = 1e-32
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = -3

Query: 174 KEYCISSDDLFSLPYCPGKTLVVGASYVALEC 205
           +E+ I+SDDLFSL   PGKTLV+G+ Y+ALEC
Sbjct: 100 REHGITSDDLFSLHTPPGKTLVIGSRYIALEC 5


>gb|AAXJ01000406.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296547770,
            whole genome shotgun sequence
          Length = 30734

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 64/208 (30%), Positives = 97/208 (46%), Gaps = 46/208 (22%)
 Frame = -2

Query: 322  EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG---STVKCDYENVPTTV---- 374
            + T++P +YA+GD + +  ELTPVAI AGR L+ RL+      +++  Y ++   +    
Sbjct: 9694 QNTSMPRVYAVGDAVGN-FELTPVAIAAGRTLSDRLFGPFKVRSIRMSYYSLMLLLLLNR 9518

Query: 375  ---------------FTPLEYGACGLSEEKA-------------VEKFGEEN-------I 399
                           F P+      +S++               ++ F   +       I
Sbjct: 9517 IQVTCT*TMRLFLLWFLPIHRLVLVVSQKLKPLRSMVRII*R*FIKLFSHHSYSIIIITI 9338

Query: 400  EVYHSYFWPLEWTI----PSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAA 455
            ++Y S F  L + I    PS D  K   K+IC T   E+VVG HV+G  A E+ QGFA A
Sbjct: 9337 QIYRSRFVNLYYGIFQVEPS-DKPKTLVKVIC-TGPEEKVVGLHVIGMAADELLQGFAVA 9164

Query: 456  LKCGLTKKQLDSTIGIHPVCAEVFTTLS 483
            ++ G TK  LD T+ IHP   E   TL+
Sbjct: 9163 MRMGATKADLDRTVAIHPTAGEEIVTLA 9080



 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
 Frame = -2

Query: 399  IEVYHSYFWPLEWTI----PSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAA 454
            I++Y S F  L + I    PS D  K   K+IC T   E+VVG HV+G  A E+ QGFA 
Sbjct: 6787 IQIYRSRFVNLYYGIFQVEPS-DKPKTLVKVIC-TGPEEKVVGLHVIGMGADELLQGFAV 6614

Query: 455  ALKCGLTKKQLDSTIGIHPVCAEVFTTLS 483
            A++ G TK  LD T+ IHP   E   TL+
Sbjct: 6613 AMRMGATKADLDRTVAIHPTAGEEIVTLA 6527



 Score = 49.3 bits (116), Expect(2) = 1e-11
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
 Frame = -1

Query: 361  STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV-----------YHSYFW-- 407
            S +  DYE +PT VF     G CGL+E +AVEK+G++N++V           YH + +  
Sbjct: 6959 SNLYIDYETIPTVVFAHPPIGTCGLTEAQAVEKYGKDNLKVIY*TLLSS*LLYHHHHYSD 6780

Query: 408  -------PLEWTIPSR 416
                    L W IPSR
Sbjct: 6779 LSFKVCESLLWYIPSR 6732



 Score = 40.4 bits (93), Expect(2) = 1e-11
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = -2

Query: 322  EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK 364
            + T++P +YA+GD + +  ELTPVAI AGR L+ RL+    V+
Sbjct: 7159 QNTSMPRVYAVGDAVGN-FELTPVAIAAGRTLSDRLFGPFKVR 7034



 Score = 35.8 bits (81), Expect = 0.19
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 17/55 (30%)
 Frame = -1

Query: 55    LGGTCVNVGCIPKK----------------LMHQAALLGQA-LQDSRNYGWKVEE 92
             +GGTCVNVGC+PKK                L   AA + +  L D+ +YG++ +E
Sbjct: 10856 IGGTCVNVGCVPKKVVVII*LVISPIILP*LTWSAATMNETFLHDACHYGFQTDE 10692



 Score = 33.5 bits (75), Expect = 0.93
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = -2

Query: 55   LGGTCVNVGCIPKKLM 70
            L GTCVNVGC+PKK++
Sbjct: 8326 LAGTCVNVGCVPKKVV 8279


>gb|AAXJ01019255.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296581676, whole genome shotgun sequence
          Length = 1024

 Score = 68.6 bits (166), Expect = 3e-11
 Identities = 58/189 (30%), Positives = 84/189 (44%), Gaps = 46/189 (24%)
 Frame = +2

Query: 341 ELTPVAIQAGRLLAQRLYAG---STVKCDYENVPTTV-------------------FTPL 378
           ELTPVAI AGR L+ RL+      +++  Y ++   +                   F P+
Sbjct: 17  ELTPVAIAAGRTLSDRLFGAFKVRSIRMSYYSLMLLLLLNRIQVTCT*TMRLFLLWFLPI 196

Query: 379 EYGACGLSEEKA-------------VEKFGEEN-------IEVYHSYFWPLEWTI----P 414
                 +S++               ++ F   +       I++Y S F  L + I    P
Sbjct: 197 HRLVLVVSQKLKPLRSMVRII*R*FIKLFSHHSYSIIIITIQIYRSRFVNLYYGIFQVEP 376

Query: 415 SRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPV 474
           S D  K   K+IC T   E+VVG HV+G  A E+ QGFA A++ G TK  LD T+ IHP 
Sbjct: 377 S-DKPKTLVKVIC-TGPEEKVVGLHVIGMAADELLQGFAVAMRMGATKADLDRTVAIHPT 550

Query: 475 CAEVFTTLS 483
             E   TL+
Sbjct: 551 AGEEIVTLA 577


>gb|AAXJ01017801.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296736556, whole genome shotgun sequence
          Length = 1059

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
 Frame = +3

Query: 399 IEVYHSYFWPLEWTI----PSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAA 454
           I++Y S F  L + I    PS D  K   K+IC T   E+VVG HV+G  A E+ QGFA 
Sbjct: 183 IQIYRSRFVNLYYGIFQVEPS-DKPKTLVKVIC-TGPEEKVVGLHVIGMGADELLQGFAV 356

Query: 455 ALKCGLTKKQLDSTIGIHPVCAEVFTTLS 483
           A++ G TK  LD T+ IHP   E   TL+
Sbjct: 357 AMRMGATKADLDRTVAIHPTAGEEIVTLA 443



 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
 Frame = +2

Query: 361 STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV-----------YHSYFW-- 407
           S +  DYE +PT VF     G CGL+E +AVEK+G++N++V           YH + +  
Sbjct: 11  SNLYIDYETIPTVVFAHPPIGTCGLTEAQAVEKYGKDNLKVIY*TLFSS*LLYHHHHYSD 190

Query: 408 -------PLEWTIPSR 416
                   L W IPSR
Sbjct: 191 LSFKVCESLLWYIPSR 238


>gb|AAXJ01001100.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296052137,
            whole genome shotgun sequence
          Length = 14471

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 13/86 (15%)
 Frame = +1

Query: 287  VMLAIGRDACTRKIGLETVGVKINEKTGKIPVTD-------------EEQTNVPYIYAIG 333
            V++A+GR   T  +GL+  GV  + +TG I V +               +TNVP I+AIG
Sbjct: 8758 VLVAVGRRPYTEGLGLDRAGVITDARTGMIEVDER*DVSGVREVCPGSLRTNVPNIWAIG 8937

Query: 334  DILEDKVELTPVAIQAGRLLAQRLYA 359
            D++   + L   A   G  +A+R+ A
Sbjct: 8938 DVVRGPM-LAHKAEDEGFAVAERINA 9012



 Score = 33.9 bits (76), Expect = 0.71
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +2

Query: 52   RWGLGGTCVNVGCIPKK-LMHQA 73
            R  LGGTC+N+GCIP K L+H +
Sbjct: 7712 RSALGGTCLNIGCIPSKCLLHSS 7780


>gb|AAXJ01001007.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296275150,
             whole genome shotgun sequence
          Length = 15716

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 13/86 (15%)
 Frame = +1

Query: 287   VMLAIGRDACTRKIGLETVGVKINEKTGKIPVTD-------------EEQTNVPYIYAIG 333
             V++A+GR   T  +GL+  GV  + +TG I V +               +TNVP I+AIG
Sbjct: 14515 VLVAVGRRPYTEGLGLDRAGVITDARTGMIEVDER*DVSGVREVCPGSLRTNVPNIWAIG 14694

Query: 334   DILEDKVELTPVAIQAGRLLAQRLYA 359
             D++   + L   A   G  +A+R+ A
Sbjct: 14695 DVVRGPM-LAHKAEDEGFAVAERINA 14769



 Score = 33.9 bits (76), Expect = 0.71
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +1

Query: 52    RWGLGGTCVNVGCIPKK-LMHQA 73
             R  LGGTC+N+GCIP K L+H +
Sbjct: 13468 RSALGGTCLNIGCIPSKCLLHSS 13536


>gb|AAXJ01005136.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296580090,
            whole genome shotgun sequence
          Length = 2889

 Score = 39.3 bits (90), Expect = 0.017
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = -2

Query: 441  LGPNAGEVTQGFAAALKCGLTKKQLDSTIGI 471
            +GP AGEV  GFA A K GLTK Q++  I I
Sbjct: 2888 IGPAAGEVIHGFAIAFKMGLTKAQIEDVIAI 2796


>gb|AAXJ01000014.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296729952,
             whole genome shotgun sequence
          Length = 112187

 Score = 34.3 bits (77), Expect = 0.54
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
 Frame = -1

Query: 50    GTRWGLGGTCVNV-------------GCIPKKLMHQAALLGQALQDSRNYGWKVEETVKH 96
             G RWGLG  C  V             G +P++  ++   +  AL+D +NY WK E     
Sbjct: 42557 GERWGLGNVCDFVTPDRRPEAGLSSPGSLPREPSYEE--VDDALEDFKNYDWKSE---LK 42393

Query: 97    DWDRMI 102
              WDR +
Sbjct: 42392 SWDRKV 42375


>gb|AAXJ01013791.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296209730,
            whole genome shotgun sequence
          Length = 1249

 Score = 33.9 bits (76), Expect = 0.71
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -1

Query: 52   RWGLGGTCVNVGCIPKK-LMHQA 73
            R  LGGTC+N+GCIP K L+H +
Sbjct: 1000 RSALGGTCLNIGCIPSKCLLHSS 932


>gb|AAXJ01002519.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296756158,
            whole genome shotgun sequence
          Length = 6125

 Score = 33.9 bits (76), Expect = 0.71
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +1

Query: 52   RWGLGGTCVNVGCIPKK-LMHQA 73
            R  LGGTC+N+GCIP K L+H +
Sbjct: 5212 RSALGGTCLNIGCIPSKCLLHSS 5280


>gb|AAXJ01005488.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296785608,
            whole genome shotgun sequence
          Length = 2714

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 375  FTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWT 412
            F PLEY +C +S    V  + EE       Y++PL+++
Sbjct: 1955 FAPLEYFSCRISPRTKVLSYYEEKNSYVEYYYYPLQYS 1842


>gb|AAXJ01001026.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296741282,
            whole genome shotgun sequence
          Length = 15515

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 58   TCVNVGCIPKKLMHQAALLGQALQDSRNYGW 88
            TCVN GC  + + H + L+ ++L   RN+ W
Sbjct: 6206 TCVNEGCRMRSV*HPSLLMSESLLVRRNHRW 6114


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,727,260
Number of Sequences: 23491
Number of extensions: 716421
Number of successful extensions: 3000
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 2000
length of query: 499
length of database: 28,681,891
effective HSP length: 111
effective length of query: 388
effective length of database: 26,074,390
effective search space: 10116863320
effective search space used: 10116863320
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
