Command line: [exonerate -m p2g --showtargetgff -q BrevicollisNCBI.aa.fa -t cromBrevicollisVSchabaudi.fa]
Hostname: [ws101177.aulescm.upf.edu]

C4 Alignment:
------------
         Query: gi|167519759|ref|XP_001744219.1| hypothetical protein [Monosiga brevicollis MX1]
        Target: scaffold_5
         Model: protein2genome:local
     Raw score: 2535
   Query range: 0 -> 506
  Target range: 1513514 -> 1515768

       1 : MetAlaThrLeuIleProAlaPheGlyAlaGlyArgAlaAlaProProAlaGluAl :      19
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           MetAlaThrLeuIleProAlaPheGlyAlaGlyArgAlaAlaProProAlaGluAl
 1513515 : ATGGCAACCTTGATACCGGCTTTTGGGGCGGGCCGAGCCGCCCCGCCGGCCGAGGC : 1513569

      20 : aSerSerSerSerHisGlyPheAspTyrAspLeuValValValGlyGlyGlySerG :      38
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           aSerSerSerSerHisGlyPheAspTyrAspLeuValValValGlyGlyGlySerG
 1513570 : GTCGTCTTCCTCACACGGCTTTGACTACGATTTAGTCGTGGTGGGCGGTGGCTCGG : 1513626

      39 : lyGlyLeuAlaAlaSerLysGluAlaAlaSerLeuGlyAlaLysThrAlaValLeu :      56
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           lyGlyLeuAlaAlaSerLysGluAlaAlaSerLeuGlyAlaLysThrAlaValLeu
 1513627 : GAGGTCTGGCCGCATCCAAGGAGGCTGCGTCGCTGGGTGCCAAGACGGCCGTGCTC : 1513680

      57 : AspPheValGlnProSerProGlnGlyThrThrTrpGlyLeuGlyGlyThrCysVa :      75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           AspPheValGlnProSerProGlnGlyThrThrTrpGlyLeuGlyGlyThrCysVa
 1513681 : GATTTTGTCCAGCCCTCGCCGCAGGGTACCACCTGGGGCTTGGGTGGCACTTGCGT : 1513737

      76 : lAsn  >>>> Target Intron 1 >>>>  ValGlyCysIleProLysLysLe :      84
           ||||            105 bp           |||||||||||||||||||||||
           lAsn++                         ++ValGlyCysIleProLysLysLe
 1513738 : CAACgt.........................agGTGGGATGCATTCCCAAAAAGCT : 1513869

      85 : uMetHisGlnAlaAlaIleIleGlyHisThrIleGluAspAlaThrSerPheGlyT :     103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           uMetHisGlnAlaAlaIleIleGlyHisThrIleGluAspAlaThrSerPheGlyT
 1513870 : GATGCACCAGGCCGCCATCATTGGTCATACCATTGAGGATGCCACCTCTTTTGGTT : 1513926

     104 : rpAspLeuGlnArgProGluLysProAsnTrpSerThrLeuValGluGlyValGln :     121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           rpAspLeuGlnArgProGluLysProAsnTrpSerThrLeuValGluGlyValGln
 1513927 : GGGACCTGCAACGTCCGGAGAAGCCCAACTGGTCCACGCTCGTGGAGGGTGTCCAG : 1513980

     122 :   >>>> Target Intron 2 >>>>  AsnHisIleArgSerLeuAsnTrpGly :     130
                       122 bp           |||||||||||||||||||||||||||
           ++                         ++AsnHisIleArgSerLeuAsnTrpGly
 1513981 : gt.........................agAACCACATTCGCTCCCTGAACTGGGGC : 1514129

     131 : TyrArgValAlaLeuArgAspLysAsnValThrTyrLeuAsnAlaTyrGlySerLe :     149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           TyrArgValAlaLeuArgAspLysAsnValThrTyrLeuAsnAlaTyrGlySerLe
 1514130 : TATCGTGTGGCCCTGCGGGACAAGAATGTGACCTACTTGAATGCCTATGGGTCTCT : 1514186

     150 : uLeuAspAlaHisThrIleAsnThrValAsnLysArgGlyLysGluGlnValIleT :     168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           uLeuAspAlaHisThrIleAsnThrValAsnLysArgGlyLysGluGlnValIleT
 1514187 : ACTGGATGCACATACCATCAATACGGTCAACAAGCGTGGCAAGGAGCAAGTGATCA : 1514243

     169 : hrAlaAspLysIleIleLeuCysProGlyGlyArgProArgTyrProAspIlePro :     186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           hrAlaAspLysIleIleLeuCysProGlyGlyArgProArgTyrProAspIlePro
 1514244 : CCGCCGACAAGATCATTCTCTGCCCGGGTGGACGCCCGCGCTATCCTGACATTCCG : 1514297

     187 : GlyAlaLysGluPheGlyIleThrSerAspAspIlePheSerLeuAspArgGluPr :     205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           GlyAlaLysGluPheGlyIleThrSerAspAspIlePheSerLeuAspArgGluPr
 1514298 : GGTGCCAAAGAGTTTGGCATCACCTCGGATGACATCTTTTCTCTGGACCGTGAGCC : 1514354

     206 : oGlyLysThrLeuValIleGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheL :     224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           oGlyLysThrLeuValIleGlyAlaSerTyrValAlaLeuGluCysAlaGlyPheL
 1514355 : TGGAAAGACCCTGGTCATTGGCGCGTCTTACGTCGCCTTGGAGTGTGCTGGCTTCC : 1514411

     225 : euAlaAlaPheGlyTyr{A}  >>>> Target Intron 3 >>>>  {sp}Thr :     231
           |||||||||||||||||{|}            246 bp           {||}|||
           euAlaAlaPheGlyTyr{A}++                         ++{sp}Thr
 1514412 : TTGCAGCCTTTGGCTAC{G}gt.........................ag{AC}ACC : 1514678

     232 : ThrValMetValArgSerIleLeuLeu{Ar}  >>>> Target Intron 4 >> :     241
           |||||||||||||||||||||||||||{||}            85 bp        
           ThrValMetValArgSerIleLeuLeu{Ar}++                       
 1514679 : ACCGTGATGGTGCGCTCTATCCTTCTG{CG}gt....................... : 1514712

     242 : >>  {g}GlyPheAspSerGluIleAlaGlnLysIleGlyAspHisMetGluArgH :     258
               {|}|||||||||||||||||||||||||||||||||||||||||||||||||
             ++{g}GlyPheAspSerGluIleAlaGlnLysIleGlyAspHisMetGluArgH
 1514713 : ..ag{T}GGATTCGATTCTGAAATCGCCCAAAAAATTGGCGACCACATGGAGCGTC : 1514844

     259 : isAlaHisValLysPheValArgGlnAlaThrProAspArgIleGluLysArgGlu :     276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           isAlaHisValLysPheValArgGlnAlaThrProAspArgIleGluLysArgGlu
 1514845 : ATGCCCATGTCAAGTTTGTGCGCCAAGCCACCCCGGACCGCATCGAAAAGCGTGAG : 1514898

     277 : AspGlyArgLeuValValHisTyrThrGlnAsnGlyGluAlaValSerAspGluPh :     295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           AspGlyArgLeuValValHisTyrThrGlnAsnGlyGluAlaValSerAspGluPh
 1514899 : GACGGTCGCTTGGTTGTCCACTACACCCAAAACGGCGAAGCGGTGTCAGACGAGTT : 1514955

     296 : eAspThrValLeuPheAlaIleGlyArgAspAlaCysThrSerThrMetGlyLeuA :     314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           eAspThrValLeuPheAlaIleGlyArgAspAlaCysThrSerThrMetGlyLeuA
 1514956 : TGATACAGTGCTCTTTGCCATTGGCCGCGACGCGTGCACCAGCACCATGGGCCTGG : 1515012

     315 : spLysAlaGlyValGlnLeuAsnGlu{Ar}  >>>> Target Intron 5 >>> :     323
           ||||||||||||||||||||||||||{||}            96 bp         
           spLysAlaGlyValGlnLeuAsnGlu{Ar}++                        
 1515013 : ATAAGGCCGGCGTGCAGCTGAATGAA{CG}gt........................ : 1515043

     324 : >  {g}AsnGlyLysValValAlaAsnGluAlaAspGlnThrAsnValProAsnIl :     340
              {|}||||||||||||||||||||||||||||||||||||||||||||||||||
            ++{g}AsnGlyLysValValAlaAsnGluAlaAspGlnThrAsnValProAsnIl
 1515044 : .ag{C}AATGGCAAGGTTGTTGCCAATGAAGCGGATCAAACCAACGTGCCCAATAT : 1515186

     341 : eTyrAlaIleGlyAspValLeuGluGlyLysProGluLeuThrProValAlaIleG :     359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           eTyrAlaIleGlyAspValLeuGluGlyLysProGluLeuThrProValAlaIleG
 1515187 : TTACGCCATTGGCGACGTGCTGGAGGGCAAACCTGAGCTCACCCCTGTGGCCATTC : 1515243

     360 : lnAlaGlyLysLeuLeuAlaArgArgLeuTyrGlyGlnSerAlaAlaLeuMetAsp :     377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           lnAlaGlyLysLeuLeuAlaArgArgLeuTyrGlyGlnSerAlaAlaLeuMetAsp
 1515244 : AGGCTGGCAAGCTGCTGGCCCGCCGCCTGTATGGTCAGAGTGCAGCCCTCATGGAT : 1515297

     378 : TyrGlnAsnValCysThrThrValPheThrProLeuGluTyrGlyCysCysGlyPh :     396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           TyrGlnAsnValCysThrThrValPheThrProLeuGluTyrGlyCysCysGlyPh
 1515298 : TATCAGAACGTGTGCACGACCGTGTTCACGCCTCTGGAATACGGCTGCTGCGGCTT : 1515354

     397 : eSerGluAspAspAlaLeuAspGlnPheGlyGluAspIleGluValPheHisGlnS :     415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           eSerGluAspAspAlaLeuAspGlnPheGlyGluAspIleGluValPheHisGlnS
 1515355 : TTCCGAAGATGACGCCCTGGATCAATTTGGCGAGGACATTGAAGTGTTCCACCAGA : 1515411

     416 : erPheThrProLeuGluTrpThrValProHisArgProGluAsnValCysPheCys :     433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           erPheThrProLeuGluTrpThrValProHisArgProGluAsnValCysPheCys
 1515412 : GTTTTACCCCCTTGGAATGGACTGTGCCTCATCGTCCTGAGAACGTCTGTTTTTGC : 1515465

     434 : LysLeuValValGlnLysSerThrAspArgValLeuGlyLeuHisPheLeuGlyPr :     452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           LysLeuValValGlnLysSerThrAspArgValLeuGlyLeuHisPheLeuGlyPr
 1515466 : AAGCTTGTCGTGCAGAAATCAACCGACCGCGTCCTTGGATTGCACTTCCTGGGTCC : 1515522

     453 : oAsnAlaGlyGluValThrGlnGlyPheGlyMetAlaLeuLysLeuLysAlaThrL :     471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           oAsnAlaGlyGluValThrGlnGlyPheGlyMetAlaLeuLysLeuLysAlaThrL
 1515523 : AAACGCCGGCGAAGTGACGCAGGGCTTTGGCATGGCCCTCAAGCTCAAGGCCACCA : 1515579

     472 : ysAlaGlnPheAspAspLeuValGlyIleHisProThrValAlaGlu  >>>> Ta :     487
           |||||||||||||||||||||||||||||||||||||||||||||||         
           ysAlaGlnPheAspAspLeuValGlyIleHisProThrValAlaGlu++       
 1515580 : AGGCGCAGTTTGATGATTTGGTGGGCATCCATCCCACGGTTGCAGAGgt....... : 1515629

     488 : rget Intron 6 >>>>  ThrLeuThrThrMetAspIleThrLysAlaSerGly :     498
              82 bp            ||||||||||||||||||||||||||||||||||||
                             ++ThrLeuThrThrMetAspIleThrLysAlaSerGly
 1515630 : ..................agACGTTGACCACCATGGACATTACAAAGGCATCAGGC : 1515742

     499 : GluSerAlaAspAlaAlaGlyCys :     506
           ||||||||||||||||||||||||
           GluSerAlaAspAlaAlaGlyCys
 1515743 : GAGTCAGCCGATGCCGCTGGTTGC : 1515768

vulgar: gi|167519759|ref|XP_001744219.1| 0 506 . scaffold_5 1513514 1515768 + 2535 M 76 228 5 0 2 I 0 101 3 0 2 M 45 135 5 0 2 I 0 118 3 0 2 M 108 324 S 0 1 5 0 2 I 0 242 3 0 2 S 1 2 M 10 30 S 0 2 5 0 2 I 0 81 3 0 2 S 1 1 M 81 243 S 0 2 5 0 2 I 0 92 3 0 2 S 1 1 M 163 489 5 0 2 I 0 78 3 0 2 M 20 60
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_5	exonerate:protein2genome:local	gene	1513515	1515768	2535	+	.	gene_id 1 ; sequence gi|167519759|ref|XP_001744219.1| ; gene_orientation +
scaffold_5	exonerate:protein2genome:local	cds	1513515	1513742	.	+	.	
scaffold_5	exonerate:protein2genome:local	exon	1513515	1513742	.	+	.	insertions 0 ; deletions 0
scaffold_5	exonerate:protein2genome:local	splice5	1513743	1513744	.	+	.	intron_id 1 ; splice_site "GT"
scaffold_5	exonerate:protein2genome:local	intron	1513743	1513847	.	+	.	intron_id 1
scaffold_5	exonerate:protein2genome:local	splice3	1513846	1513847	.	+	.	intron_id 0 ; splice_site "AG"
scaffold_5	exonerate:protein2genome:local	cds	1513848	1513982	.	+	.	
scaffold_5	exonerate:protein2genome:local	exon	1513848	1513982	.	+	.	insertions 0 ; deletions 0
scaffold_5	exonerate:protein2genome:local	splice5	1513983	1513984	.	+	.	intron_id 2 ; splice_site "GT"
scaffold_5	exonerate:protein2genome:local	intron	1513983	1514104	.	+	.	intron_id 2
scaffold_5	exonerate:protein2genome:local	splice3	1514103	1514104	.	+	.	intron_id 1 ; splice_site "AG"
scaffold_5	exonerate:protein2genome:local	cds	1514105	1514429	.	+	.	
scaffold_5	exonerate:protein2genome:local	exon	1514105	1514429	.	+	.	insertions 0 ; deletions 0
scaffold_5	exonerate:protein2genome:local	splice5	1514430	1514431	.	+	.	intron_id 3 ; splice_site "GT"
scaffold_5	exonerate:protein2genome:local	intron	1514430	1514675	.	+	.	intron_id 3
scaffold_5	exonerate:protein2genome:local	splice3	1514674	1514675	.	+	.	intron_id 2 ; splice_site "AG"
scaffold_5	exonerate:protein2genome:local	cds	1514676	1514709	.	+	.	
scaffold_5	exonerate:protein2genome:local	exon	1514676	1514709	.	+	.	insertions 0 ; deletions 0
scaffold_5	exonerate:protein2genome:local	splice5	1514710	1514711	.	+	.	intron_id 4 ; splice_site "GT"
scaffold_5	exonerate:protein2genome:local	intron	1514710	1514794	.	+	.	intron_id 4
scaffold_5	exonerate:protein2genome:local	splice3	1514793	1514794	.	+	.	intron_id 3 ; splice_site "AG"
scaffold_5	exonerate:protein2genome:local	cds	1514795	1515040	.	+	.	
scaffold_5	exonerate:protein2genome:local	exon	1514795	1515040	.	+	.	insertions 0 ; deletions 0
scaffold_5	exonerate:protein2genome:local	splice5	1515041	1515042	.	+	.	intron_id 5 ; splice_site "GT"
scaffold_5	exonerate:protein2genome:local	intron	1515041	1515136	.	+	.	intron_id 5
scaffold_5	exonerate:protein2genome:local	splice3	1515135	1515136	.	+	.	intron_id 4 ; splice_site "AG"
scaffold_5	exonerate:protein2genome:local	cds	1515137	1515626	.	+	.	
scaffold_5	exonerate:protein2genome:local	exon	1515137	1515626	.	+	.	insertions 0 ; deletions 0
scaffold_5	exonerate:protein2genome:local	splice5	1515627	1515628	.	+	.	intron_id 6 ; splice_site "GT"
scaffold_5	exonerate:protein2genome:local	intron	1515627	1515708	.	+	.	intron_id 6
scaffold_5	exonerate:protein2genome:local	splice3	1515707	1515708	.	+	.	intron_id 5 ; splice_site "AG"
scaffold_5	exonerate:protein2genome:local	cds	1515709	1515768	.	+	.	
scaffold_5	exonerate:protein2genome:local	exon	1515709	1515768	.	+	.	insertions 0 ; deletions 0
scaffold_5	exonerate:protein2genome:local	similarity	1513515	1515768	2535	+	.	alignment_id 1 ; Query gi|167519759|ref|XP_001744219.1| ; Align 1513515 1 228 ; Align 1513848 77 135 ; Align 1514105 122 324 ; Align 1514678 231 30 ; Align 1514796 242 243 ; Align 1515138 324 489 ; Align 1515709 487 60
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
