TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1 #anophagefferens # scaffold_11:subseq(783554,7436).pep  
         (488 letters)

Database: genome.fa 
           4707 sequences; 47,745,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pathogen_EIMER_contig_00030728 - eimer-2042a11.q1ka low_quality_...    94   4e-19
pathogen_EIMER_contig_00029637 - eimer-4027d10.p1ka low_quality_...    59   9e-09
pathogen_EIMER_contig_00029288 - eimer-4238e01.p1ka low_quality_...    56   1e-07
pathogen_EIMER_contig_00011084 - eimer-2928e11.q1ka low_quality_...    46   1e-04
pathogen_EIMER_contig_00028763 - eimer-458g08.p1k low_quality_re...    34   0.41 
pathogen_EIMER_contig_00029319 - eimer-2707e05.p1k low_quality_r...    33   0.70 
pathogen_EIMER_contig_00029387 - eimer-3920a08.q1ka low_quality_...    31   2.7  
pathogen_EIMER_contig_00028561 - eimer-4540c11.p1ka low_quality_...    31   2.7  
pathogen_EIMER_contig_00020965 - eimer-2230k03.p1k low_quality_r...    30   5.9  
pathogen_EIMER_contig_00031646 - eimer-3008f10.q1k low_quality_r...    30   5.9  
pathogen_EIMER_contig_00018348 - eimer-1257d02.q1ka low_quality_...    30   5.9  

>pathogen_EIMER_contig_00030728 - eimer-2042a11.q1ka low_quality_removed
          Length = 26116

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 43/58 (74%), Positives = 49/58 (84%)
 Frame = -2

Query: 8     VVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHTAS 65
             V+GGGSGGLA  K+ A LGA+V VLDFVKPS  G +WGLGGTCVNVGCIPKKL+H A+
Sbjct: 19995 VIGGGSGGLASGKQAAGLGARVLVLDFVKPSIRGLSWGLGGTCVNVGCIPKKLLHFAA 19822



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 30/110 (27%)
 Frame = -2

Query: 205   YPTTCMVRSILLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEKDAATGVLTVTDSGGG 264
             +  T  VRS++LRGFDR+C  K++ +++  GV+   G    KI+K+ +  +    ++ G 
Sbjct: 16641 FQATVAVRSVVLRGFDRQCAAKVQQNLEEIGVEFLEGFVVEKIQKEESGALWEAREAAGA 16462

Query: 265   VH------------------------------EYDTVLVATGRYADTAAL 284
                                              +DTVL ATGR ADT  L
Sbjct: 16461 AETPAAAKSAKNDPKKLLVFLKNSQNGSSLALRFDTVLYATGRDADTKLL 16312



 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 23/36 (63%), Positives = 28/36 (77%)
 Frame = -2

Query: 319   IGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDY 354
             +GD V+  PELTPVAI+AG  LARRLFGG +E + Y
Sbjct: 14331 LGDCVKDFPELTPVAIKAGEILARRLFGGSSEVVIY 14224



 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 444   AMRKGATYADFISTVGIHPTVAEEFTSMTVTKSSGES-AAKGGCXG 488
             A    A   DF +TVGIHPT AE F  + +TK SG+   A GGC G
Sbjct: 11619 AAAAAAAQEDFDNTVGIHPTNAESFMLLQITKRSGKDWVAAGGCGG 11482



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 47/120 (39%)
 Frame = -2

Query: 378   KAQLGECNVESYISEFAPLEYALSETRSERGDG-----------------------CFAK 414
             +A+ G   VE Y+SEF PLE A    + +R                          C +K
Sbjct: 12309 QAKYGADRVEIYLSEFMPLETAAVHRQQKRRKQLQQQQQQQQQQQEEEEFLDLSPICLSK 12130

Query: 415   LVV---------------------DKSTGK---VVGFHYLGPNAGEITQGFSIAMRKGAT 450
             LV                        S+ K   V G H++GPNAGE+ QG ++A+R GAT
Sbjct: 12129 LVCVREDPSSSSSSSSSSSSSSSSSSSSSKKEIVKGVHFVGPNAGEVLQGMALAVRLGAT 11950



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
 Frame = -1

Query: 75    AAAFGWKDAAAGAHDWESMKSTVQDHIKSLNFKYRVALREAGITYLNRLG--------EF 126
             A+A     A+A A    +    VQ +IK LNF YRV L+ AG TY   L         E+
Sbjct: 19276 ASAAASAAASAAATAAAAAAQRVQSYIKQLNFSYRVGLQNAGCTYTRALARLVGPHTVEY 19097

Query: 127   EDKNTISL 134
             E+K  +SL
Sbjct: 19096 EEKGVVSL 19073



 Score = 38.9 bits (89), Expect = 0.013
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = -3

Query: 352   MDYECVATTIFTPLEYGTIGLSEDDA 377
             MD+  + TT+FTP+EYG +GL+E++A
Sbjct: 13208 MDFSNIPTTVFTPVEYGCVGLTEEEA 13131



 Score = 35.4 bits (80), Expect = 0.14
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -3

Query: 141   KTSVTAARFIVAVGGRPN-KLGCPGG-EHAIDSDDLFSLPKAPGR 183
             K  V+A   ++AVGGRP+     PG  E  + SD++FSL ++PG+
Sbjct: 18734 KKEVSAKHLLLAVGGRPHVPPEVPGAREFCVTSDEIFSLKQSPGK 18600



 Score = 33.5 bits (75), Expect = 0.54
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = -2

Query: 185   LCVGGGYIALECGGFTAGMGY 205
             L VGG YIALEC GF   +GY
Sbjct: 17019 LVVGGSYIALECAGFLQQLGY 16957


>pathogen_EIMER_contig_00029637 - eimer-4027d10.p1ka low_quality_removed
          Length = 11568

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 28/57 (49%), Positives = 40/57 (70%)
 Frame = -2

Query: 4    YDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKL 60
            +D VV+GGGSGG+A ++  A  GAKVA+++  +         +GGTCVNVGC+PKK+
Sbjct: 7748 FDCVVLGGGSGGIAFARRAATYGAKVALVERSR---------MGGTCVNVGCVPKKV 7605



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
 Frame = -1

Query: 143  SVTAARFIVAVGGRPNKLGCPGGEHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAG 202
            +  AA    A GGRP+ L  PGGE  IDS   F+L + P +V  VGGGYIA+E       
Sbjct: 6876 AAAAAAAAAAAGGRPSPLRVPGGELCIDSAGFFALQQQPRKVGVVGGGYIAVELAAVLQS 6697

Query: 203  MGYPTTCMVRS-ILLRGFDRECVGKIEAHIKHHGVQLQ 239
            +G  T    R    LR FD     +   +++  G+Q++
Sbjct: 6696 LGSETHFFCRQHAPLRKFDSMIQQQNLDNMRKLGIQVR 6583



 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
 Frame = -1

Query: 328  ELTPVAIEAGLRLARRLFGGKTE-PMDYECVATTIFTPLEYGTIGLSEDDAKAQLGE 383
            ELTP+AI AG RLA R++G       DY+ V + IF+    G++G SE++A  Q G+
Sbjct: 5877 ELTPMAIAAGRRLADRVYGHLAHAKADYDFVPSVIFSHPPIGSVGFSEEEAAKQFGK 5707



 Score = 31.6 bits (70), Expect = 2.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 415  LVVDKSTGKVVGFHYLGPNAGEITQGFSIAMR 446
            L +     K+VG H +G +A EI QGF++A++
Sbjct: 4797 LFLQSQKEKIVGLHLVGLSADEILQGFAVAIK 4702


>pathogen_EIMER_contig_00029288 - eimer-4238e01.p1ka low_quality_removed
          Length = 99100

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 27/59 (45%), Positives = 36/59 (61%)
 Frame = +3

Query: 3     DYDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLM 61
             +YDVVV+GGG GG   + + A+LG K A ++            LGGTC+NVGCIP K +
Sbjct: 48441 EYDVVVIGGGPGGYVAAIKAAQLGLKTACVE--------KRGALGGTCLNVGCIPSKAL 48593



 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 166   EHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGYPTT 208
             E  + S    +LP+ P  ++ VGGG I LE G     +G   T
Sbjct: 49435 ETIVSSTGALALPRVPKHLVVVGGGVIGLELGSVWRNLGAEVT 49563


>pathogen_EIMER_contig_00011084 - eimer-2928e11.q1ka low_quality_removed
          Length = 1999

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 26/62 (41%), Positives = 31/62 (50%)
 Frame = -1

Query: 4   YDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHT 63
           YDV VVG G GG A       LG +VA +    P         GGTCVN GC+P K +  
Sbjct: 448 YDVAVVGLGVGGHAACLHAKSLGLRVAAISGGDP---------GGTCVNRGCVPSKALLA 296

Query: 64  AS 65
           A+
Sbjct: 295 AA 290


>pathogen_EIMER_contig_00028763 - eimer-458g08.p1k low_quality_removed
          Length = 126532

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
 Frame = -1

Query: 4    YDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHT 63
            +DVVVVGGG  G+      A++GA   V   V P   G+   L       G    +L+  
Sbjct: 4597 FDVVVVGGGHAGVEAGLAAARVGAPACV---VTPGGPGAPGALACNPSVGGSGKSQLLQE 4427

Query: 64   ASIIGETL--KDDAAAFGWK--DAAAGAHDWESMKSTVQDHIKSLNFKYRVALREAGITY 119
            A   G  L    D AA  W+  + + G   W       +    +   ++  AL   G+ +
Sbjct: 4426 ADACGALLGRAADLAAVHWRVLNLSRGPAAWAPRAQLDRRRFAACMQRFAAAL--PGLVF 4253

Query: 120  LNRLGE 125
            L+   E
Sbjct: 4252 LDAAAE 4235


>pathogen_EIMER_contig_00029319 - eimer-2707e05.p1k low_quality_removed
          Length = 43256

 Score = 33.1 bits (74), Expect = 0.70
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -1

Query: 39    PAGSTWGLGGTCVNVGCIPK------KLMHTASIIGETLKDDAAAFGWKDAAAGAH 88
             PAGST  LGG+C   GC         +L+  +S   E++ +D A  G + AA G H
Sbjct: 28601 PAGSTEPLGGSCTRPGCSSSSSRSSTELLRRSSNSEESVLEDTA--GQRTAAVGPH 28440


>pathogen_EIMER_contig_00029387 - eimer-3920a08.q1ka low_quality_removed
          Length = 53374

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 4     YDVVVVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGL 46
             +DV++VGGG  GLA +  C + G    V++  +    G  W +
Sbjct: 16566 FDVLIVGGGVAGLAGALHCQRAGVDYQVIE-ARGRLGGRVWSI 16441


>pathogen_EIMER_contig_00028561 - eimer-4540c11.p1ka low_quality_removed
          Length = 116981

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 452   ADFISTVGIHPTVAEEFTSMTVTKSSGESAAKGGCXG 488
             ADF+ +V +  ++ E+F+S + + SS  S+    C G
Sbjct: 47900 ADFVRSVSLQGSICEQFSSSSSSSSSSSSSFSSSCRG 48010


>pathogen_EIMER_contig_00020965 - eimer-2230k03.p1k low_quality_removed
          Length = 92802

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +3

Query: 157   PNKLGCPGGEHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILL 216
             P  LGCP   H +  ++      +         G   ++    +A MGY +TC V  + L
Sbjct: 77793 PGPLGCPSLTHVVSLEE-----DSAAAAAAAAAGKAEIQASPLSALMGYRSTCGVNIVPL 77957

Query: 217   RGFD 220
             R  D
Sbjct: 77958 RCTD 77969


>pathogen_EIMER_contig_00031646 - eimer-3008f10.q1k low_quality_removed
          Length = 515133

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 8     VVGGGSGGLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVG 54
             +VGGG  G +     A +GA + +     PS AGS  G        G
Sbjct: 27560 LVGGGPSGSSAGSHSAVVGAHIELPAAASPSSAGSVSGAAAAATGAG 27700


>pathogen_EIMER_contig_00018348 - eimer-1257d02.q1ka low_quality_removed
          Length = 2858

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
 Frame = -1

Query: 216  LRGFDRECVGKIEAHIKHHGV----QLQVGVTPAKIEKDAATGVLTVTDSGGGVHEYDTV 271
            LRGF + C  ++ AH+ +  V         V  A +   AA  V+   +   G+      
Sbjct: 2801 LRGFVKSCAVQLCAHLLNQAVAAAAAAAAAVAAAAVAVAAAAAVVVAAEWNFGIPLEGGS 2622

Query: 272  LVATGRYADTAALGIDNVPGASA 294
            ++A    A  AALGI     A+A
Sbjct: 2621 VLAAAAAAALAALGISAAAAAAA 2553


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 47,745,626
  Number of sequences in database:  4707
  
Lambda     K      H
   0.317    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,112,633
Number of Sequences: 4707
Number of extensions: 806711
Number of successful extensions: 2301
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 930
length of query: 488
length of database: 15,915,208
effective HSP length: 107
effective length of query: 381
effective length of database: 15,411,559
effective search space: 5871803979
effective search space used: 5871803979
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
