TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1 #anophagefferens # scaffold_11:subseq(783554,7436).pep  
         (488 letters)

Database: genome.fa 
           6902 sequences; 42,263,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AANW02001413.1| Entamoeba invadens IP1 gcontig_1105074716308,...    31   3.0  
gb|AANW02000076.1| Entamoeba invadens IP1 gcontig_1105074715218,...    30   4.0  
gb|AANW02000018.1| Entamoeba invadens IP1 gcontig_1105074711859,...    30   4.0  

>gb|AANW02001413.1| Entamoeba invadens IP1 gcontig_1105074716308, whole genome shotgun
            sequence
          Length = 7514

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 220  DRECVGKIEAHIKHHGVQLQVGVTPAKIEKDA 251
            +  C GKI  HI  H ++LQ+  T  ++EK A
Sbjct: 4444 NEHCKGKISLHIWIHAIELQMANTEKEVEKGA 4349


>gb|AANW02000076.1| Entamoeba invadens IP1 gcontig_1105074715218, whole genome shotgun
             sequence
          Length = 59396

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 3     DYDVVVVGGGSGGLACSKEC--AKLGAKVAVLD 33
             ++D+VVVGGG  GLA +K         KVAV++
Sbjct: 32618 EFDIVVVGGGPSGLAAAKAALDTNKSLKVAVIE 32716



 Score = 30.0 bits (66), Expect = 5.2
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 4     YDVVVVGGGSGGLACSKECAKL-GAKVAVLDFVKPSPAGSTWGLGGTC 50
             YDVV++G G  G   + E +K    KVA+L+  +    G+T    G C
Sbjct: 31070 YDVVIIGAGCVGSFAALEFSKYKNLKVALLEKARDVSTGATSANSGIC 31213


>gb|AANW02000018.1| Entamoeba invadens IP1 gcontig_1105074711859, whole genome shotgun
             sequence
          Length = 112050

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 4     YDVVVVGGGSGGLACSKECAKL-GAKVAVLDFVKPSPAGSTWGLGGTC 50
             YDVV++G G  G   + E +K    KVA+L+  +    G+T    G C
Sbjct: 73054 YDVVIIGAGCVGAFAALEFSKYKNLKVALLEKARDVSTGATSANSGIC 73197



 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 3     DYDVVVVGGGSGGLACSKEC--AKLGAKVAVLD 33
             ++D+VVVGGG  GLA +K         KVAV++
Sbjct: 74602 EFDIVVVGGGPSGLAAAKAALDTNKSLKVAVIE 74700


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 42,263,565
  Number of sequences in database:  6902
  
Lambda     K      H
   0.317    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,236,748
Number of Sequences: 6902
Number of extensions: 206122
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 225
length of query: 488
length of database: 14,087,855
effective HSP length: 106
effective length of query: 382
effective length of database: 13,356,243
effective search space: 5102084826
effective search space used: 5102084826
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
