TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1
         (499 letters)

Database: genome.fa 
           7809 sequences; 167,727,055 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_97                                                           243   2e-63
scaffold_4                                                             74   8e-21
scaffold_20                                                            67   2e-19
scaffold_2360                                                          60   2e-08
scaffold_69                                                            53   3e-06
scaffold_302                                                           44   1e-04
scaffold_8618                                                          47   1e-04
scaffold_186                                                           40   0.027
scaffold_172                                                           40   0.027
scaffold_457                                                           39   0.046
scaffold_9                                                             39   0.046
scaffold_13                                                            38   0.10 
scaffold_61                                                            37   0.17 

>scaffold_97 
          Length = 506417

 Score =  243 bits (619), Expect = 2e-63
 Identities = 123/202 (60%), Positives = 148/202 (73%), Gaps = 8/202 (3%)
 Frame = -2

Query: 306   GVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV--------ELTPVAIQAGRLLAQRL 357
             GVK++   GK+P T  EQTNVP+IYAIGDI++ +         ELTPVAIQAG+LLA RL
Sbjct: 55615 GVKLSSN-GKVP-TVNEQTNVPHIYAIGDIIDGEALNPPSATTELTPVAIQAGKLLADRL 55442

Query: 358   YAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRD 417
             YAG +   DY  V TTV+TPLEYGA GL EE+A++  GE+NIEVYHSYF PLEWT+P R 
Sbjct: 55441 YAGKSALMDYSMVATTVYTPLEYGAVGLPEEEAIKLHGEDNIEVYHSYFKPLEWTLPHRG 55262

Query: 418   NNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 477
             +N CYAK+IC   + ERV+G HV GPNAGE+TQGFA A+K G TK   D T+GIHP  AE
Sbjct: 55261 DNVCYAKLICLKPEGERVIGLHVCGPNAGEMTQGFAVAIKAGATKAHFDDTVGIHPTVAE 55082

Query: 478   VFTTLSVTKRSGASILQAGCUG 499
              FT L+ TKRSG S  ++GC G
Sbjct: 55081 EFTLLATTKRSGDSAEKSGC*G 55016



 Score = 86.7 bits (213), Expect = 2e-16
 Identities = 43/73 (58%), Positives = 53/73 (72%)
 Frame = -2

Query: 141   KATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASY 200
             +A + KGK    +A   +I TG RPRY  IPG KE  I+SDD+F+L   PG+TLVVGASY
Sbjct: 56494 QAVDKKGKVTKITASEIVICTGGRPRYPDIPGAKELGITSDDVFALKSPPGRTLVVGASY 56315

Query: 201   VALECAGFLAGIG 213
             VALECAGF+ G+G
Sbjct: 56314 VALECAGFIKGVG 56276



 Score = 68.9 bits (167), Expect = 4e-11
 Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 21/110 (19%)
 Frame = -1

Query: 215   DVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPG------RLR 268
             D TVM+RSI LRGFDQ MA     +M+EHG+ FI   VP  VE   +G         RL 
Sbjct: 56120 DTTVMMRSIPLRGFDQQMAGLCKTYMQEHGVAFIEGAVPTAVEATPSGAKKVGCRICRLS 55941

Query: 269   V---------------VAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLE 303
             +               V+       +  GEY+TV+ AIGRD CT  IG++
Sbjct: 55940 ISQ*LSVLPEVLRRL*VSWKLADGSVGSGEYDTVLFAIGRDVCTSAIGID 55791



 Score = 40.4 bits (93), Expect = 0.016
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = -1

Query: 66    PKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQ 106
             P  L  QAALLG+ + D+ ++GW+V    KH+W+ M+  VQ
Sbjct: 57179 PMLLPRQAALLGEGMTDAESFGWEV-AAPKHNWETMVGNVQ 57060



 Score = 38.5 bits (88), Expect = 0.060
 Identities = 18/26 (69%), Positives = 19/26 (73%)
 Frame = -1

Query: 48    PLGTRWGLGGTCVNVGCIPKKLMHQA 73
             PL     L  +CVNVGCIPKKLMHQA
Sbjct: 57410 PLRRPPSLRRSCVNVGCIPKKLMHQA 57333



 Score = 35.8 bits (81), Expect = 0.39
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = -3

Query: 38    VMVLDFVTPTPLGTRWGLGGT 58
             V V DFV P+P GT WGLGGT
Sbjct: 57510 VAVCDFVKPSPPGTTWGLGGT 57448


>scaffold_4 
          Length = 2300294

 Score = 74.3 bits (181), Expect(2) = 8e-21
 Identities = 81/331 (24%), Positives = 140/331 (42%), Gaps = 37/331 (11%)
 Frame = -2

Query: 185     SLPYCPGKTLVVGASYVALECAGFLAGIGLDVT-VMVRSILLRGFDQDMANKIGEHM--- 240
               SLP  P    ++G+ Y+ LE +     +G +VT +     ++  FD+ +A      +   
Sbjct: 1998787 SLPQVPDWIAIIGSGYIGLEFSDVYTALGSEVTFIEAMPKMMPFFDRQIAQLADRILIRP 1998608

Query: 241     ---EEHGIKFIRQFVPI-------------------KVEQIEAGTPGRLRVVAQ--STNS 276
                  + +   F  +  P                    ++ Q+  G PG      +    N+
Sbjct: 1998607 RAIDSYTNVFASEAPPACRAADAAARSPAPSPPRLARLPQVTPGIPGERPATVKMIDANT 1998428

Query: 277     EEIIEG-EYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDE------EQTNVPYI 329
               +E +E  E + VM+  GR   +  +GLE V V+ N   G +PV D+      +   +  +
Sbjct: 1998427 KEHVETIEVDAVMVCTGRKPFSEGLGLENVNVETNR--GFVPVDDKMRALDKDGNVIDGL 1998254

Query: 330     YAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEK 389
               + IGD L  K+ L   A   G    + +  G     +++ VP   FT  E    G +EE+
Sbjct: 1998253 WCIGD-LNGKMMLAHAASAQGISAVENM-CGHEHVLNHDAVPAACFTHPEIAMVGPTEEQ 1998080

Query: 390     AVEKFGEENIE--VYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGE 447
               A E+  +E  E  +    F      + +    +  AK+I   KD   VV  H++G +A +
Sbjct: 1998079 AKERAEKEGWEMGIAQGNFKANSKAL-AEGEGEGIAKVIFR-KDTFEVVAVHIIGIHAAD 1997906

Query: 448     VTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 478
               + Q  A A++ G T ++L  T+  HP   EV
Sbjct: 1997905 LIQECANAIQHGTTLQELSMTVHTHPTLCEV 1997813



 Score = 47.4 bits (111), Expect(2) = 8e-21
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
 Frame = -1

Query: 55      LGGTCVNVGCIPKKLMHQAALLGQALQDSRN---YGWKVEETVKHDWDRMIEAVQNHIGS 111
               +GGTCVN GC+P K +  A+   + +Q+ ++    G K+E  V +D   + +   N    
Sbjct: 1999247 VGGTCVNRGCVPSKALLAASGRVRDMQNDKHLAAMGVKLEGAVTYDRQGVADHANNLASR 1999068

Query: 112     LNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY-LGI 170
               +    R +L    V      G   GP  I+     G  K   A+  ++ATG  P    G+
Sbjct: 1999067 VQGNLRGSLTALGVTVFEEKGSLAGPTSIELV---GAGKTIEAKNVILATGSVPFVPPGV 1998897

Query: 171     PGDKEYCISSDDLFSLPY 188
                 D +   +SD+   L +
Sbjct: 1998896 ETDGKTVFTSDEALKLEW 1998843



 Score = 33.9 bits (76), Expect = 1.5
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = -1

Query: 302     LETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQR----L 357
               L+   V++N   G + V +E  TNVP +YAIGDI     +   VA   G + A      L
Sbjct: 2038001 LDGQAVELNPDGG-VKVDEEMATNVPGVYAIGDIRNTPYKQVVVAASDGCIAAMSIDRFL 2037825

Query: 358     YAGSTVKCDY 367
                   T+K D+
Sbjct: 2037824 KGRKTIKVDW 2037795


>scaffold_20 
          Length = 1047965

 Score = 67.0 bits (162), Expect(2) = 2e-19
 Identities = 38/89 (42%), Positives = 48/89 (53%)
 Frame = -3

Query: 125    VVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLF 184
              V +     +F+ P  ++    +     YSA+  LIA G RP    IPG  EYCISSD  F
Sbjct: 550170 VTHVEGLARFVAPREVEVAGAR-----YSADHVLIAVGGRPATPPIPG-AEYCISSDGFF 550009

Query: 185    SLPYCPGKTLVVGASYVALECAGFLAGIG 213
               L   P K LVVGA Y+A+E AG L  +G
Sbjct: 550008 DLKAQPEKALVVGAGYIAVELAGILQALG 549922



 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
 Frame = -1

Query: 388    EKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYA-KIICNTKDNERVVGFHVLGPNAG 446
              E+A E +G+ N++ Y S F P+ + +   +  K  A K++C   + ERVVG HV+G  A 
Sbjct: 548684 EQAREAYGDANVKAYKSVFKPMHFALCEEEAKKPMAMKLVC-AGEEERVVGLHVIGIAAD 548508

Query: 447    EVTQGFAAALKCGLTK 462
              E+ QGFA A+K G TK
Sbjct: 548507 EMLQGFAVAVKMGATK 548460



 Score = 49.7 bits (117), Expect(2) = 2e-19
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = -2

Query: 54     GLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLN 113
              G GGTCVNVGC+PKKLM+ AA   +A + +  YG ++ +  + DW  +      ++  LN
Sbjct: 550450 GYGGTCVNVGCVPKKLMYTAAAHFEAAETAPGYGVEMGKP-RLDWGALAAKRDAYVARLN 550274

Query: 114    WGY 116
                Y
Sbjct: 550273 GIY 550265



 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -2

Query: 310    NEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGST-VKCDYE 368
              NE+  +      ++T V  +Y +GD      ELTPVAI AGR LA R++ G+   K +Y 
Sbjct: 549079 NERMNESMNGSPQETGVSGLYCLGDASTSGFELTPVAIAAGRRLADRIFGGAADAKFEYA 548900

Query: 369    NVPT 372
              N+ T
Sbjct: 548899 NIAT 548888



 Score = 35.0 bits (79), Expect = 0.66
 Identities = 18/41 (43%), Positives = 29/41 (70%)
 Frame = -1

Query: 287    VMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVP 327
              V++AIGR   T ++GLE  GV+++ K G++ V DE+Q  +P
Sbjct: 549287 VLMAIGRTPVTAELGLEATGVQLDGK-GRV-VVDEKQATLP 549171


>scaffold_2360 
          Length = 5153

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
 Frame = +2

Query: 388 EKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYA-KIICNTKDNERVVGFHVLGPNAG 446
           E+A E +G+ N++ Y S F P+ + +   +  K  A K++C   + ERVVG HV+G  A 
Sbjct: 359 EQAREAYGDANVKAYKSVFKPMHFALCEEEAKKPMAMKLVC-AGEEERVVGLHVIGIAAD 535

Query: 447 EVTQGFAAALKCGLTK 462
           E+ QGFA A+K G TK
Sbjct: 536 EMLQGFAVAVKMGATK 583



 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 323 QTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGST-VKCDYENVPT 372
           +T V  +Y +GD      ELTPVAI AGR LA R++ G+   K +Y N+ T
Sbjct: 3   ETGVSGLYCLGDASTSGFELTPVAIAAGRRLADRIFGGAADAKFEYANIAT 155


>scaffold_69 
          Length = 624888

 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 32/102 (31%), Positives = 47/102 (46%)
 Frame = +1

Query: 108    HIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY 167
              ++  LN  Y   L    V +     +F GP  +        ++  + +  LIA G RP  
Sbjct: 446404 YVTRLNGIYANNLANSDVTFVEGDARFTGPKTVAVG-----DRTLTGKAVLIAVGGRPSV 446568

Query: 168    LGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFL 209
                IPG  E  I+SD  F L   P +  V+G+ Y+A+E AG L
Sbjct: 446569 PDIPGAAELGITSDGFFELDSVPDRVAVIGSGYIAVELAGIL 446694



 Score = 43.9 bits (102), Expect = 0.001
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +3

Query: 344    PVAIQAGRLLAQRLYAGST---VKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGE 396
              P AI AGRLL+ RL+ G++      DY+ VPT VF+      CGL+E ++     E
Sbjct: 447555 PTAIAAGRLLSDRLFGGASEADTLMDYDFVPTVVFSHPPLAVCGLTEARSSRDLAE 447722



 Score = 42.0 bits (97), Expect = 0.005
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +1

Query: 441    LGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482
              LG    E+ QGFA A+K G TK   DS + IHP  +E   T+
Sbjct: 448105 LGLAVDEILQGFALAMKMGATKADFDSVVAIHPTSSEELVTI 448230


>scaffold_302 
          Length = 125934

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +1

Query: 344    PVAIQAGRLLAQRLYAGST---VKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGE 396
              P AI AGRLL+ RL+ G++      DY+ VPT VF+      CGL+E ++     E
Sbjct: 109165 PTAIAAGRLLSDRLFGGASEADTLMDYDFVPTVVFSHPPLAVCGLTEARSSRDLAE 109332



 Score = 42.0 bits (97), Expect = 0.005
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +2

Query: 441    LGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482
              LG    E+ QGFA A+K G TK   DS + IHP  +E   T+
Sbjct: 109715 LGLAVDEILQGFALAMKMGATKADFDSVVAIHPTSSEELVTI 109840



 Score = 33.5 bits (75), Expect(2) = 1e-04
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = +3

Query: 108    HIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY 167
              ++  LN  Y   L    V +     +F GP  +        ++  + +  LIA G RP  
Sbjct: 107979 YVTRLNGIYANNLANSDVTFVEGDARFTGPKTVAVG-----DRTLTGKSVLIAVGGRPSV 108143

Query: 168    LGIPGDKEYCISSDDLFSL 186
                IPG  E  I+SD  F L
Sbjct: 108144 PDIPGAAELGITSDGFFEL 108200



 Score = 33.1 bits (74), Expect(2) = 1e-04
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 178    ISSDDLFSLPYCPGKTLVVGASYVALECAGFL 209
              I+SD  F L   P +  V+G+ Y+A+E AG L
Sbjct: 108242 ITSDGFFELDSVPDRVAVIGSGYIAVELAGIL 108337


>scaffold_8618 
          Length = 1242

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
 Frame = -2

Query: 55  LGGTCVNVGCIPKKLMHQAALLGQALQDSRN---YGWKVEETVKHDWDRMIEAVQNHIGS 111
           +GGTCVN GC+P K +  A+   + +Q+ ++    G K+E  V +D   + +   N    
Sbjct: 497 VGGTCVNRGCVPSKALLAASGRVRDMQNDKHLAAMGVKLEGAVTYDRQGVADHANNLASR 318

Query: 112 LNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY-LGI 170
           +    R +L    V      G   GP  I+     G  K   A+  ++ATG  P    G+
Sbjct: 317 VQGNLRGSLTALGVTVFEEKGSLAGPTSIELV---GAGKTIEAKNVILATGSVPFVPPGV 147

Query: 171 PGDKEYCISSDDLFSLPY 188
             D +   +SD+   L +
Sbjct: 146 ETDGKTVFTSDEALKLEW 93


>scaffold_186 
          Length = 286947

 Score = 39.7 bits (91), Expect = 0.027
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +1

Query: 52    RWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIE 103
             R  LGGTC+NVGCIP K L+H + L  +A +    +G    + VK D D++++
Sbjct: 66802 RGRLGGTCLNVGCIPSKALLHSSHLYEEAAKGWGPHGISA-DNVKMDLDKLMK 66957


>scaffold_172 
          Length = 281237

 Score = 39.7 bits (91), Expect = 0.027
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +3

Query: 52    RWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIE 103
             R  LGGTC+NVGCIP K L+H + L  +A +    +G    + VK D D++++
Sbjct: 23040 RGRLGGTCLNVGCIPSKALLHSSHLYEEAAKGWGPHGISA-DNVKMDLDKLMK 23195



 Score = 33.5 bits (75), Expect = 1.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 435   VVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF 479
             V+G H++  NAGE+      A++ G + + +  T   HP  +E F
Sbjct: 25323 VLGIHIIASNAGEMIAEGVLAMEYGASAEDIGRTCHAHPTMSEAF 25457


>scaffold_457 
          Length = 57152

 Score = 38.9 bits (89), Expect = 0.046
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
 Frame = -2

Query: 56    GGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV-----EETVKHDWDRMIEAVQN--- 107
             GG C+NVGC+P K +   A   +  + +   G+ V        ++ D+D ++  ++    
Sbjct: 31573 GGDCLNVGCVPSKALLHCARAAREARAALAEGFLVAADGTAPKLEVDFDAVMARMRRLRA 31394

Query: 108   HIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY 167
             HI   +  +  +      VY+  + +F GP  +        E+    ++ +IATG R   
Sbjct: 31393 HIAPAD-SHEGSAAAGAHVYQ-GWARFSGPDTVVV-----NERTLRFKKCVIATGGRAAV 31235

Query: 168   LGIPG-DKEYCISSDDLFSLPYCPGKTLVVGASYVALECA 206
                PG      +++  L++L   P + +V+GA  + +E A
Sbjct: 31234 PPTPGLAAAPYVTNATLYNLTALPPRMVVLGAGVIGMEMA 31115



 Score = 33.9 bits (76), Expect = 1.5
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = -2

Query: 281   EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV 340
             E E   +++A GR      +GL+  GV    K G I + D   T+ P +YA+GD      
Sbjct: 30694 ELECEALLVATGRTPNVDGLGLDAAGVAHCGKEG-IAIDDLGATSNPRVYAVGDCAAGVP 30518

Query: 341   ELTPVAIQAGRLLAQRLYAGSTVK 364
               T ++ +  +L  Q    G   K
Sbjct: 30517 RFTHMSGEMAKLAVQNALFGDGCK 30446


>scaffold_9 
          Length = 1354121

 Score = 38.9 bits (89), Expect = 0.046
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
 Frame = -3

Query: 56     GGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV-----EETVKHDWDRMIEAVQN--- 107
              GG C+NVGC+P K +   A   +  + +   G+ V        ++ D+D ++  ++    
Sbjct: 287139 GGDCLNVGCVPSKALLHCARAAREARAALAEGFLVAADGTAPKLEVDFDAVMARMRRLRA 286960

Query: 108    HIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY 167
              HI   +  +  +      VY+  + +F GP  +        E+    ++ +IATG R   
Sbjct: 286959 HIAPAD-SHEGSAAAGAHVYQ-GWARFSGPDTVVV-----NERTLRFKKCVIATGGRAAV 286801

Query: 168    LGIPG-DKEYCISSDDLFSLPYCPGKTLVVGASYVALECA 206
                 PG      +++  L++L   P + +V+GA  + +E A
Sbjct: 286800 PPTPGLAAAPYVTNATLYNLTALPPRMVVLGAGVIGMEMA 286681



 Score = 33.9 bits (76), Expect = 1.5
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = -3

Query: 281    EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV 340
              E E   +++A GR      +GL+  GV    K G I + D   T+ P +YA+GD      
Sbjct: 286260 ELECEALLVATGRTPNVDGLGLDAAGVAHCGKEG-IAIDDLGATSNPRVYAVGDCAAGVP 286084

Query: 341    ELTPVAIQAGRLLAQRLYAGSTVK 364
                T ++ +  +L  Q    G   K
Sbjct: 286083 RFTHMSGEMAKLAVQNALFGDGCK 286012


>scaffold_13 
          Length = 1180512

 Score = 37.7 bits (86), Expect = 0.10
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
 Frame = +2

Query: 55     LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNW 114
              LGG C   GC+P K +  +A    AL+ +  +G     TV  D   +   +   IG +  
Sbjct: 810263 LGGDCTWTGCVPSKTLLASAERAHALRTAAEFGVAQPATVSVDMAAVKARIGRTIGQIYD 810442

Query: 115    G--YRVALREKKVVYENAYGQFIGPHRIK-ATNNKGKEKIYSAER-FLIATGERP 165
                    ALR   +   +     +   R+  ++   G   +Y A +  ++ATGERP
Sbjct: 810443 ADDSPEALRALGIETVSGAATLVDARRVSVSSGGGGTATVYEATKGVVLATGERP 810607


>scaffold_61 
          Length = 631686

 Score = 37.0 bits (84), Expect = 0.17
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = -3

Query: 52     RWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIE 103
              R  LGGTC+NVGCIP K L+H + L  +A +    +G    + VK D  ++++
Sbjct: 496783 RGRLGGTCLNVGCIPSKALLHSSHLYEEAAKGWGPHGISA-DNVKMDLGKLMK 496628


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 167,727,055
  Number of sequences in database:  7809
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,919,838
Number of Sequences: 7809
Number of extensions: 1569768
Number of successful extensions: 6000
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 4447
Number of HSP's gapped (non-prelim): 2966
length of query: 499
length of database: 55,909,018
effective HSP length: 116
effective length of query: 383
effective length of database: 55,003,174
effective search space: 21066215642
effective search space used: 21066215642
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
