TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TR1
         (499 letters)

Database: genome.fa 
           799 sequences; 32,967,507 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_418                                                          278   9e-75
scaffold_49                                                           160   3e-39
scaffold_148                                                           38   0.021

>scaffold_418 
          Length = 26405

 Score =  278 bits (710), Expect = 9e-75
 Identities = 170/431 (39%), Positives = 259/431 (60%), Gaps = 2/431 (0%)
 Frame = -3

Query: 56    GGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWG 115
             GGTCVNVGC+PKK+M   A + + +  S +YG+K    VK +W  + +A  ++I  LN  
Sbjct: 17061 GGTCVNVGCVPKKVMWNTAFIKEMINASPSYGFKFGGEVKFEWPIIKKARDDYIKRLNGI 16882

Query: 116   YRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKE 175
             Y   L +  +V  + YG+F+GP  I+ +   G EK Y+A+  LIATG +P    +PG KE
Sbjct: 16881 YDNNLAKDGIVKLSGYGKFVGPKEIQVS---GGEK-YTADHILIATGGKPNVPDVPG-KE 16717

Query: 176   YCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMAN 234
               I+SD  F L   P  TLVVGA Y+A+E AG L  +G + T+ +R+   LR FD  + +
Sbjct: 16716 LGITSDGFFELEDLPKSTLVVGAGYIAVELAGVLHTLGSETTMAIRNEQFLRTFDDMLHH 16537

Query: 235   KIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRD 294
              +   ME  G+KF++    I +E+   G     ++VA + N+ ++   E   V+ AIGRD
Sbjct: 16536 TLLTQMENDGVKFVKNSSIISLEKNADG-----KIVATTNNNVKLPPVE--CVIWAIGRD 16378

Query: 295   ACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLA 354
               +  IGL+  G+++ +K   I V + + T  P +YA+GD+   K+ LTPVAI AGR L+
Sbjct: 16377 PNSLDIGLDKAGIQV-DKNNFIKVDEFQNTTAPGVYAVGDVC-GKLLLTPVAIAAGRRLS 16204

Query: 355   QRLY-AGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTI 413
             +RL+ A   +K +YENV T +F+    G  GL+E++AVEK+G+ENI+ Y+S F  + +++
Sbjct: 16203 ERLFNAKDGLKFEYENVATVIFSHPPIGTVGLTEKEAVEKYGKENIKCYNSTFVNMFYSV 16024

Query: 414   PSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHP 473
              S    K   K++C   +NE+VVG H++G ++ E+ QGFA A+K G TK  LD+T  IHP
Sbjct: 16023 QSH-KVKTSMKLVCQ-GENEKVVGIHIIGDSSDEIIQGFAVAVKMGATKSDLDNTCAIHP 15850

Query: 474   VCAEVFTTLSV 484
                E  + L +
Sbjct: 15849 TAGEEVSFLFI 15817


>scaffold_49 
          Length = 116333

 Score =  160 bits (404), Expect = 3e-39
 Identities = 120/439 (27%), Positives = 215/439 (48%), Gaps = 8/439 (1%)
 Frame = +3

Query: 47    TPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAV 105
             T +  R  LGGTC+NVGCIP K L++ + L   A     +YG K    V+ D+  M++  
Sbjct: 80556 TVVEKRGKLGGTCLNVGCIPSKALLNASHLYETATTKMGDYGVKCNN-VELDFGGMMKYK 80732

Query: 106   QNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP 165
             +  +  L  G     ++ KV Y   +G+  GP+ ++ T N G  K    +  +IATG   
Sbjct: 80733 EKAVSGLTAGIESLFKKNKVDYAKGHGKITGPNTVEVTMNDGSVKTIETKNIVIATGSEV 80912

Query: 166   RYLGIPG---DKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VR 221
                 +     D+E  +SS    SL   P   +V+G   + LE     + +    TV+   
Sbjct: 80913 STGALSNVVIDEESIVSSTGALSLKTVPKDLIVIGGGVIGLELGSVYSRLNSKTTVIEFT 81092

Query: 222   SILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIE 281
             + +  G D ++A K  + +E+  +KF    +  KV  +     GR+ V  +   +     
Sbjct: 81093 NRIAAGADGEVAKKFQKSLEKQHMKF---HLETKVTSVVKQPNGRVAVTVEQVGASGYTG 81263

Query: 282   G-EYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV 340
               E + V++++GR   T+ +GLE VGV   +K G++ V +   T VP IYAIGD +   +
Sbjct: 81264 TLEADVVLVSVGRRPNTQNLGLENVGVP-TDKAGRVEVDEHFATKVPSIYAIGDAIRGPM 81440

Query: 341   ELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIE 400
              L   A + G  + ++L++G     +Y+ +P+ ++T  E    G +EE+ ++K G +   
Sbjct: 81441 -LAHKAEEEGIAIIEQLHSG-VGHVNYDAIPSVIYTHPEVAWVGKTEEE-LQKAGIQ--- 81602

Query: 401   VYHSYFWPLEWTIPSRDNNKC--YAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKC 458
              Y++  +P      ++ N+    + K + + K+ +R++G H++G NAGE+      A++ 
Sbjct: 81603 -YNAGKFPFIGNSRAKTNDDAEGFVKFLAD-KETDRILGVHIMGANAGELIAESVLAMEY 81776

Query: 459   GLTKKQLDSTIGIHPVCAE 477
             G + + +  T   HP  +E
Sbjct: 81777 GASSEDVARTCHAHPTLSE 81833


>scaffold_148 
          Length = 68897

 Score = 37.7 bits (86), Expect = 0.021
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 9/202 (4%)
 Frame = -2

Query: 148   KEKIYSAERFLIATGERPRYLGIPGDKEY-------CISSDDLFSLPYCPGKTL-VVGAS 199
             ++K    E  ++ATG   + +G+PG++++       C   D   +LP    K L VVG  
Sbjct: 41278 EDKPILTESIILATGATAKRMGVPGEEKFWSKGVSACAVCDG--ALPIYRNKHLVVVGGG 41105

Query: 200   YVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 259
               A E A FL      VT++VR   +R      A+K  +   ++  K    +  + VE  
Sbjct: 41104 DTAAEEATFLTHFASKVTMLVRRNTMR------ASKAMQERVKNNAKINVLWDTVLVE-- 40949

Query: 260   EAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKI-PV 318
               G      V  ++  + E  + E   +  AIG    +  +G    G    ++TG I  V
Sbjct: 40948 IKGDDKVNAVGIENVKTGEKSDLEAQGLFYAIGHTPNSSFLG----GQLDVDETGYIKTV 40781

Query: 319   TDEEQTNVPYIYAIGDILEDKV 340
                 +T+V  ++A GD+ +DK+
Sbjct: 40780 PGSSKTSVEGVFACGDV-QDKI 40718


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:50 PM
  Number of letters in database: 32,967,507
  Number of sequences in database:  799
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,891,799
Number of Sequences: 799
Number of extensions: 191312
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 76
length of query: 499
length of database: 10,989,169
effective HSP length: 105
effective length of query: 394
effective length of database: 10,905,274
effective search space: 4296677956
effective search space used: 4296677956
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
