T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:2 sec.
SCORE=94
*
 BAD AVG GOOD
*
TR.Babesia_bobi   :  96
TR.Theileria_pa   :  93
TR.Plasmodium_c   :  96
TR.Perkinsus_ma   :  94
TR.Theileria_an   :  93
TR.Toxoplasma_g   :  93
TR.Plasmodium_b   :  96
cons              :  94

TR.Babesia_bobi   ---------------------------------------------
TR.Theileria_pa   ME--ELICELKMFNFKRLKLISSAVPRIFLSSYLLFRQSDFTPHS
TR.Plasmodium_c   ---------------------------------------------
TR.Perkinsus_ma   ---------------------------------------------
TR.Theileria_an   M------------LFKKRNLITITVPKIFLSSYLIFRQSDFLSYS
TR.Toxoplasma_g   VPPERLPCTPLA--------HAAAVVAVWNSGSLLVSTPLF---S
TR.Plasmodium_b   ---------------------------------------------

cons                                                           


TR.Babesia_bobi   ---------------------------------------------
TR.Theileria_pa   LCYNINFHPSDRT----ISLFNKYP------NPNTSLHSQHSTCY
TR.Plasmodium_c   ---------------------------------------------
TR.Perkinsus_ma   ---------------------------------------------
TR.Theileria_an   FCYNFNHLTDYRNFFHKINSNNSYSNSSNSYSINTSLQSSQSNSY
TR.Toxoplasma_g   VCR------------------------TETSSCAPPAQRQQERAF
TR.Plasmodium_b   ---------------------------------------------

cons                                                           


TR.Babesia_bobi   ------------------------------------YDLAVIGGG
TR.Theileria_pa   ST------------------------PVQLRNPMARYDLVVLGGG
TR.Plasmodium_c   ---------------------------------NYDYDYIVIGGG
TR.Perkinsus_ma   ---------------------------------------------
TR.Theileria_an   STNTNSQSNHTNTNSNHTNTNTNFEKNSFRIKNMIHYDLIVLGGG
TR.Toxoplasma_g   ASERKLSVISTNA-SEMAPTNTNNGAPS-CADGEFDYDLAVIGGG
TR.Plasmodium_b   ---------------------------------------------

cons                                                           


TR.Babesia_bobi   CSGLAAAKEAARL--------------------------------
TR.Theileria_pa   PAGMAAAKEAARL--------------------------------
TR.Plasmodium_c   PGGMASAKEAASH--------------------------------
TR.Perkinsus_ma   ---------------------------------------------
TR.Theileria_an   PAGMAAAKEASRLEFQQFLFFFQFLFYHEFTVQSIQFLFHYQLTI
TR.Toxoplasma_g   SGGLACAKMAAAQ--------------------------------
TR.Plasmodium_b   ---------------------------------------------

cons                                                           


TR.Babesia_bobi   --------GAKTVLFDYVRPS-PRGTKWGLGGTCVNVGCIPKKLM
TR.Theileria_pa   --------GKRTVLFDYVTPS-PRGTSWGVGGTCVNVGCIPKKLM
TR.Plasmodium_c   --------GAKVLLFDFVKPS-TQGTKWGIGGTCVNVGCVPKKLM
TR.Perkinsus_ma   -------------LCDFVSPSITRGTKWGLGGTCVNVGCIPKKLM
TR.Theileria_an   QSHQHKFQCKRTVLFDYVTPS-ARGTSWGVGGTCVNVGCIPKKLM
TR.Toxoplasma_g   --------GAKTVVFDFVQPS-TQGSTWGLGGTCVNVGCVPKYLF
TR.Plasmodium_b   ---------------------------------------------

cons                                                           


TR.Babesia_bobi   HYAGILGH-AEHDREMLGWSDAS-------PKHDWSKMIQTIQNY
TR.Theileria_pa   HYASLLRS-TQYDRFQYGITSSPD-----QEQVNWTKLTQTIQNY
TR.Plasmodium_c   HYAGNMGTLFKNDSEKYGWDCDN-------LKHDWNKLVSTVQSH
TR.Perkinsus_ma   HYTGTLEG-QLRDAKQLGYTEIPEKKAGDHYQHDWNTMVSDIQMY
TR.Theileria_an   HYASLLRS-SNYDKFQYGLTNTQE-----LTPINWNKLIQTIQNY
TR.Toxoplasma_g   HHTGLAGANAHWDGPHMGWKGKFE------EQVDWGVCVEKVQNY
TR.Plasmodium_b   ---------------------------------------------

cons                                                           


TR.Babesia_bobi   VKMLNFSYRSGLLTTGVKYINAFATLEK---DHQVSYLG-PNG--
TR.Theileria_pa   VKMLNFSYRSGLTTAGVDYINAYGTLKH---NNTVEYTH-NNE--
TR.Plasmodium_c   IRSLNFSYMVGLKSSKVKYINGLAKLKD---KNTVSYYL-KGDTS
TR.Perkinsus_ma   IKKLNFMYRTGLRNGGVEYENAWGCFDPEAGPHTVKLTNKKGE--
TR.Theileria_an   IKMLNFSYRSSLLTSGVDYINAFGILKH---NKIIEYNL-NNE--
TR.Toxoplasma_g   IKSLNFGYRTGLRKAGVTYINAYAKFVS---PHELAYTF-RGE--
TR.Plasmodium_b   ----------------VKYINGLAKLKN---KNTVSYYL-KGDSS

cons                              * * *. . :      : :      .   


TR.Babesia_bobi   -PERIKAKHILIAIGTRPIIPEEVKGAYEYSITSDDLMSLSHPVG
TR.Theileria_pa   -TKSVVGEKVIIAVGERPYVPSDVQGALEYAITSDDLFKLNTSPG
TR.Plasmodium_c   KEECVTGKYILVATGCRPNIPDDVIGAKELSITSDDIFSLKRCPG
TR.Perkinsus_ma   -VRTVTAKNVLVATGGRPRIL-DIPGAREYGITSDDLFSLHTPPG
TR.Theileria_an   -IKYVSGDKIIIAIGERPYIPSDVEGANEYAITSDDLFQLNTNPG
TR.Toxoplasma_g   -DKICKARNIVVAVGGRPHIPEEVEGAKELAITSDDIFSLKQAPN
TR.Plasmodium_b   KEDCVTGKYILIATGCRPNIPDDVIGAKELSITSDDIFSLKNDPG

cons                    .  :::* * ** :  :: ** * .*****::.*    .


TR.Babesia_bobi   KTLIVGGSFVALECAGFLTALGYDVTVAVRS-IILRGFDRQCAEK
TR.Theileria_pa   KTLIVGASYVALECAGFLTGLGFDVDVSVRS-ILLRGFDRQCVRK
TR.Plasmodium_c   KTLVVGASYVALECAGFLNSLGYDVTISVRS-IILRGFDQQCANK
TR.Perkinsus_ma   KTLVIGSRYIALECAGFLTELGYDTTVSVRSDKVLKNFDQDMANK
TR.Theileria_an   KTLIVGASYVALECAGFLTGLGYNVDVSVRS-ILLRGFDRQCVKK
TR.Toxoplasma_g   KTLCVGASYISLECAGFLRELGFDVTVAVRS-ILLRGFDRQCAEQ
TR.Plasmodium_b   KTLVVGASYVALECAGFLNSLGYDTTVSVRS-IILRGFDQQCANK

cons              *** :*. :::*******  **::. ::***  :*:.**:: ..:


TR.Babesia_bobi   VGDLMENMGTRFIRGSSPTSVTKLA--DGKLEVTFDNG-----HV
TR.Theileria_pa   VEELMEASGVSFLYQKLPTKIEKV---NQRLKVKFTHS-----YS
TR.Plasmodium_c   IKLYMEEQGVTFMTGVLPKKLTKE---NDKILVHFNND-----TT
TR.Perkinsus_ma   VKSVMQELGTKFLMESEPVSLTKEATEGSRIVVKFEDG-----TS
TR.Theileria_an   VEELMEASGVLFLYHKLPIKIEKH---NQQLKVTFNDQ-----SV
TR.Toxoplasma_g   VGLCLEEAGVRILRETIPAKMVKQA--NGKIQVTFQVGKEKKELV
TR.Plasmodium_b   IKLYMEEQGVTFMCGILPKKLTKE---NDKILVHFNNN-----TT

cons              :   ::  *. ::    * .: *    . :: * *          


TR.Babesia_bobi   ETYDTLMYATGRTD-------------------------N-GMTG
TR.Theileria_pa   --FLHIFY-----------NLRELGLEFDGNGN-IIAP-N-EETN
TR.Plasmodium_c   EVFDTVLYAIGRKGDIDGLNLEKLNININNNNKKIIADQF-SCTN
TR.Perkinsus_ma   DEYDTVLFATGRTPSTANLGLPSEAFASPTSAK-LIVDEKNLVRG
TR.Theileria_an   NYYDTVLYAIGRIPSQYTQHLKEVGIEFDGNGN-ILVT-N-EETN
TR.Toxoplasma_g   EEFDTVLYATGRKADTSNLNLQAAGVETTETGK-IVCDGD-SHTS
TR.Plasmodium_b   ELFDTVLYAIGRKGDIDGLNLEKLNININSNNNKIITDEF-SCTN

cons                :  :::                                    .


TR.Babesia_bobi   YPNVYAVGDVAEGNPALATVAVKDGEMLARRLFGNSNKLMDLNYV
TR.Theileria_pa   IKNVYAVGDIVSKVPKLAPVAIKSSELLIQRLYSNTNTKMNYENV
TR.Plasmodium_c   IPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNSNEIMKYDFI
TR.Perkinsus_ma   TPCVYAVGDVLKGKPELTPVAVKDGELLADRLFGGKTKLMDYSGI
TR.Theileria_an   IKDIYAVGDIVSKVPKLAPVAIKSSELLIQRLYSNNNTQMNYENV
TR.Toxoplasma_g   APSVYAIGDAVENFPELTPVAIKAGEILARRLFANSTEHMDFTNI
TR.Plasmodium_b   IPNIFAVGDIAENVPELAPVAIKAGEILARRLFKNSNEIMKYNFI

cons                 ::*:**  .  * *:.**:* .*:*  **: ...  *.   :


TR.Babesia_bobi   PMCVFTPIEYGKCGLSEEEAVKKYG--DVDIYLKEFTSLEFSAVH
TR.Theileria_pa   PKCVYTPFEYSSCGLTEEEAIERFGEENLEIYLKEYNNLEISPVH
TR.Plasmodium_c   PTSIYTPIEYGSCGYSEEKAYEIFGKNNIEVFLQEFNNLE-----
TR.Perkinsus_ma   PTTVFTPAEYSHVGMSEEEALKEYRQDEIECYMYSWGSLELSVTH
TR.Theileria_an   PKCVYTPFEYSSCGLTEEEAIEKYGEDNLEIYLKEYNNLEISPVH
TR.Toxoplasma_g   PTTVFTPIEYAHTGYSEEAAEAEFGRDDLEVYLFQFSPLFFSCVH
TR.Plasmodium_b   PTSIYTPIEYGSCGYSEEKAYELFGKNNIEIFLQEFNNLE-----

cons              *  ::** **.  * :** *   :   ::: :: .:  *      


TR.Babesia_bobi   RHK----------V--EWMQTGLSKMICKK--DGTIVGIHFVGPN
TR.Theileria_pa   RINK----KTNDEF--DYPMTCLSKVICLR--DGKIVGMHFVGPN
TR.Plasmodium_c   ---------------------CFSKLVCLKNEDNRVVGFHYVGPN
TR.Perkinsus_ma   RPKVPSA--MANEFDEEMSPNCMCKIVVHE-PDEKVLGFHYIGPA
TR.Theileria_an   RINK----KTNDEF--DYPMTCLSKVICLK--DGKIIGMHFVGPN
TR.Toxoplasma_g   REKAPQARKSPEDV--DITPPCLAKLICVKSEDEKVVGIHFVGPN
TR.Plasmodium_b   ---------------------CLSKLVCLKNEDNRVVGFHYVGPN

cons                                    :.*::  .  *  ::*:*::** 


TR.Babesia_bobi   AGEIIQGLCVAVRLGAKKSDFDDTIGVHPTDAESFM-NLTVTKAS
TR.Theileria_pa   AGEIMQGFSVLFTLNAKKSDLDKTVGIHPTDAESFV-NLTVTKAS
TR.Plasmodium_c   AGEVTQGMALALKLNAKKSDFDNCIGIHPTDAESFM-NLTITLSS
TR.Perkinsus_ma   AGEVIHGFAIAFKMGLTKAQIEDIVGVHPTDCEAVIQQMDITKSS
TR.Theileria_an   AGEIMQGFSVLLTLNAKKSDLDKTVGIHPTDAESFV-NLTVTKSS
TR.Toxoplasma_g   AGELMQGFALAVRLGAKKRDFDKCVGIHPTNAEAFM-ALTVTKAS
TR.Plasmodium_b   AGEVTQGMALALKLNAKKSDFDNCIGIHPTDAESFM-NLSITLSS

cons              ***: :*:.: . :. .* :::. :*:***:.*:.:  : :* :*


TR.Babesia_bobi   GESWVQSAGCGGGRCG
TR.Theileria_pa   GDSWVATGGCAGGKCG
TR.Plasmodium_c   GLSYAAKGGCGGGKCG
TR.Perkinsus_ma   GESYVSSGGCGGGKCG
TR.Theileria_an   GKSWIATGGCAGGKCG
TR.Toxoplasma_g   GEPFVASGGCGGGKCG
TR.Plasmodium_b   GLSYAAKGGCGGGKCG

cons              * .:  ..**.**:**