T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:1 sec.
SCORE=95
*
 BAD AVG GOOD
*
TR.Aerococcus_a   :  96
TR.Monosiga_bre   :  95
TR.Emiliania_hu   :  95
TR.Perkinsus_ma   :  95
TR.Phytophthora   :  94
TR.Thalassiosir   :  95
cons              :  95

TR.Aerococcus_a   ------------------------GFDYDVVVVGGGSGGLACSKE
TR.Monosiga_bre   MATLIPAFGAGRAAPPAEASSSSHGFDYDLVVVGGGSGGLAASKE
TR.Emiliania_hu   -------------------------------VIGGGSGGLACSKR
TR.Perkinsus_ma   M--------------P---DPAESVYDWDLFVIGGGSGGLAAAKT
TR.Phytophthora   -------------------DEAETSYDYDLVVIGGGSGGLACSKE
TR.Thalassiosir   -------------------------YEYDLLVLGGGSGGLAASKE

cons                                             *:********.:* 


TR.Aerococcus_a   CAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHTASI
TR.Monosiga_bre   AASLGAKTAVLDFVQPSPQGTTWGLGGTCVNVGCIPKKLMHQAAI
TR.Emiliania_hu   AASHGKKVAVCDFVKPSPPGTTWGLGGTCVNVGCIPKKLMHQA--
TR.Perkinsus_ma   AAALGARVALADFVKPSPQGTTWGLGGTCVNVGCIPKKLLHMSAH
TR.Phytophthora   AASFGQKVCVLDYVKPSPQGTSWGLGGTCVNVGCIPKKLMHQSSL
TR.Thalassiosir   AAAHGARVAVLDYVKPSPAGSTWGLGGTCVNVGCIPKKLMHTAAL

cons              .*  * :..: *:*:*** *::*****************:* :  


TR.Aerococcus_a   IGETLKDDAAAFGWKD----AAAGAHDWESMKSTVQDHIKSLNFK
TR.Monosiga_bre   IGHTIE-DATSFGWDLQ----RPEKPNWSTLVEGVQNHIRSLNWG
TR.Emiliania_hu   ---------------------------------------------
TR.Perkinsus_ma   TAETAG-DSAGLGWELT------ASHNWEAMIQNVTTYISSLNWG
TR.Phytophthora   IGELMHHDSANFGWNIASADGSASTFSWKQLVANVDGYIRGINFK
TR.Thalassiosir   LNYQQKT-EEWMGMSQ---DNADAPHSWGILKNNVQNHIRGLNFK

cons                                                           


TR.Aerococcus_a   YRVALREAGITYLNRLGEFEDKNTISLTDKKGNKTSVTAARFIVA
TR.Monosiga_bre   YRVALRDKNVTYLNAYGSLLDAHTINTVNKRGKEQVITADKIILC
TR.Emiliania_hu   ---------------------------VDKKGKVTKITASEIVIC
TR.Perkinsus_ma   YKSELRSTNVKYFNSFATFIDRNTLKLTDKRGKESIVTARYILIA
TR.Phytophthora   YKVELRSKYVKYENFLGSFVDAHTLELWHPRKGTKQITTRDVVIA
TR.Thalassiosir   YRVDLREKEVTYLNMLGKFKDAHTVETVDKKGNVGSITASRFLIA

cons                                          . :     :*:  .::.


TR.Aerococcus_a   VGGRPNKLGCPGG-EHAIDSDDLFSLP-KAPGRVLCVGGGYIALE
TR.Monosiga_bre   PGGRPRYPDIPGAKEFGITSDDIFSLD-REPGKTLVIGASYVALE
TR.Emiliania_hu   TGGRPRYPDIPGAKELGITSDDVFALK-SPPGRTLVVGASYVALE
TR.Perkinsus_ma   TGGRPNLGGYPGAGECCITSDDIFRRK-APPGKTLVVGASYIALE
TR.Phytophthora   VGGRPKELTCPGG-EHAISSDDIFWMKKKEPGKTLVVGASYVALE
TR.Thalassiosir   VGGRPSPLDCEGG-ELAISSDDVFSLE-NDPGKVLCVGASYISLE

cons               ****      *. *  * ***:*      **:.* :*..*::**


TR.Aerococcus_a   CGGFTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKH-HGVQLQ
TR.Monosiga_bre   CAGFLAAFGYDTTVMVRSILLRGFDSEIAQKIGDHMERHAHVKFV
TR.Emiliania_hu   CAGFIKGVGYDTTVMMRSIPLRGFDQQMAGLCKTYMQEH-GVAFI
TR.Perkinsus_ma   CAGFIAGFGYDTTVMVRSILLRGFDQDMAQRIGKYMEL-HGTKFV
TR.Phytophthora   CAGFLKGMGYDVKVMVRSILLRGFDQDMANKIGEYMEVQSGIEFI
TR.Thalassiosir   CAGFLKGIGKDVTVAVRSILLRGFDRECADLIGEHMRH-EGIVFK

cons              *.**  ..*  ..  :*** ***** : .     ::.      : 


TR.Aerococcus_a   VGVTPAKIEK-------------------------EYDTVLVATG
TR.Monosiga_bre   RQATPDRIEKREDGRLVVH------YTQNGEAVSDEFDTVLFAIG
TR.Emiliania_hu   EGAVPTAVEATPSGV-S-W------KLADGSVGSGEYDTVLFAIG
TR.Perkinsus_ma   HEMIPTKFEKTEDGKVRVYAKSSSDTMSDADSEFGVFDTVLMAVG
TR.Phytophthora   RKTVPQSITKLENGQLLVKW-----TTEDGESCEEAFDTVLNATG
TR.Thalassiosir   EEVVPKKLVKTEGGRIAVTF-------SNGDV--EEYDTVLAAIG

cons                  *  .                            :**** * *


TR.Aerococcus_a   RYADTAALGIDNVP--GASANVNAKTKKLECV-DEQLPGAPHVYA
TR.Monosiga_bre   RDACTSTMGLDK-----AGVQLNERNGKVVANEADQ-TNVPNIYA
TR.Emiliania_hu   RDVCTSAIGIDKCHSRQAGVKLS-SNGKVPTV-NEQ-TNVPHIYA
TR.Perkinsus_ma   RTGCAGWLSLDNA-----GVHYNPDKGKIPVDKFEM-TNIDNIYA
TR.Phytophthora   RDPDVAKLGLDKA-----RVKLNEKTGRIWVK-NEQ-TSTPNIYA
TR.Thalassiosir   RTGDTSKLGLENV-----GIDVNPKNAKIPAK-LEQ-TCTPNIYV

cons              *   .. :.:::        . .  . ::     :  .   ::*.


TR.Aerococcus_a   IGDVVEGR------PELTPVAIEAGLRLARRLFGGKTEPMDYECV
TR.Monosiga_bre   IGDVLEGK------PELTPVAIQAGKLLARRLYGQSAALMDYQNV
TR.Emiliania_hu   IGDIIDGEALNPPSAELTPVAIQAGKLLADRLYAGKSALMDYSMV
TR.Perkinsus_ma   IGDVVEGM------LELTPVAIQSGKMLAARLFGGASRLMDYHNV
TR.Phytophthora   IGDVIDA-------PELTPVAIQAGRLLSRRLYNNSTAQMDYDKI
TR.Thalassiosir   IGDVMDGC------PELTPVAIHAGKMLSRRLFAGSTAPMDYRNV

cons              ***:::.        *******.:*  *: **:   :  ***  :


TR.Aerococcus_a   ATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSE
TR.Monosiga_bre   CTTVFTPLEYGCCGFSEDDALDQFGED-IEVFHQSFTPLEWTVP-
TR.Emiliania_hu   ATTVYTPLEYGAVGLPEEEAIKLHGEDNIEVYHSYFKPLEWTLP-
TR.Perkinsus_ma   PTTVFTPIEYGSVGSSEENAKEEYGDD-LIVYHSFFKPLLWALNK
TR.Phytophthora   CTAVFTPIEYGCCGLSEEDSKERYGEDNIEVYHKNFVPLEWSLSE
TR.Thalassiosir   CTTVFTPLEYGTVGYSEDDAIAEFGKENVEVYHKYFIPLEWSLSP

cons               *:::**:***  * .*:::    *.  :  : . * ** :::  


TR.Aerococcus_a   TRSERGDGCFAKLVVDKSTG-KVVGFHYLGPNAGEITQGFSIAMR
TR.Monosiga_bre   HRPEN--VCFCKLVVQKST-DRVLGLHFLGPNAGEVTQGFGMALK
TR.Emiliania_hu   HRGDN--VCYAKLICLKPEGERVIGLHVCGPNAGEMTQGFAVAIK
TR.Perkinsus_ma   DRGDA--DCYMKVLCENKGDKKVVGIHILGPDAGEMIQGLAVAMK
TR.Phytophthora   ETRTAAESCYLKVICDKTRDKFVVGFHYLGPNAGEVTQAMGLAMK
TR.Thalassiosir   SRSES--QGFCKAIVYKATR-KVLGLHYLGPNAGEVMQGFGTAMK

cons                       : * :  :     *:*:*  **:***: *.:. *::


TR.Aerococcus_a   KGATYADFISTVGIHPTVAEEFTSMTVTKSSGESAAKGG-CUG
TR.Monosiga_bre   LKATKAQFDDLVGIHPTVAETLTTMDITKASGESADAAG-CUG
TR.Emiliania_hu   AGATKAHFDDTVGIHPTVAEEFTLLATTKRSGDSAEKSG-CUG
TR.Perkinsus_ma   AGCTKANLDDTVGIHPTCAETFTTLTQIKEDGQDATVGGSCUG
TR.Phytophthora   LGFTYDQMVDTVGIHPTTAETFTTLEITKSSGGTTTGGG-CUG
TR.Thalassiosir   LGCKFEDITETVGIHPTTAEELTTLSITKASGADAKASG-CUG

cons                 .  .: . ****** ** :* :   * .*  :  .* ***