TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 ch...    24   5.0  

>gb|AAGK01000002.1| Theileria parva strain Muguga chromosome 2 chr2_complete, whole genome
              shotgun sequence
          Length = 1971884

 Score = 23.9 bits (50), Expect = 5.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 30     RTWQFRGTIPQNPHLAPRFRPNVN-DRYQIRRG 61
              R W+F   +P  P L   F+ NVN   Y++R+G
Sbjct: 788598 RVWRFFTVVPH*PGLNSCFK-NVN*QMYKVRKG 788503



 Score = 23.1 bits (48), Expect = 8.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 37     TIPQNPHLAPR 47
              TIPQ+PH  PR
Sbjct: 247954 TIPQSPHTTPR 247986


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,778
Number of Sequences: 9
Number of extensions: 3906
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 7
length of query: 66
length of database: 2,782,535
effective HSP length: 41
effective length of query: 25
effective length of database: 2,782,166
effective search space: 69554150
effective search space used: 69554150
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)
