TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelQ_toxoplasma_gondii_gladyshev # QUERY
         (66 letters)

Database: genome.fa 
           31,653 sequences; 18,560,894 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

terra179d07.q1k                                                        25   6.4  

>terra179d07.q1k 
          Length = 738

 Score = 24.6 bits (52), Expect = 6.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 24  IQPEHRRTWQFRGTIPQNPHLAPR 47
           IQP  RR  QFRGT  Q   L+ R
Sbjct: 431 IQPIGRRLLQFRGTSQQPSSLSQR 502


  Database: genome.fa
    Posted date:  Feb 1, 2010  4:17 PM
  Number of letters in database: 18,560,894
  Number of sequences in database:  31,653
  
Lambda     K      H
   0.326    0.143    0.484 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 849,455
Number of Sequences: 31653
Number of extensions: 6640
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 66
length of database: 6,186,964
effective HSP length: 36
effective length of query: 30
effective length of database: 5,047,456
effective search space: 151423680
effective search space used: 151423680
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)
