TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: genome.fa 35 sequences; 31,379,198 total letters Searching...................................done Score E Sequences producing significant alignments: (bits) Value ref|NC_009320.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 44 9e-05 ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 32 0.35 ref|NC_009294.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 30 0.77 ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 30 0.77 ref|NC_009308.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 28 2.9 ref|NC_009321.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 28 5.0 ref|NC_009276.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 27 6.5 ref|NC_009295.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 27 8.5 ref|NC_009309.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 27 8.5 ref|NC_009312.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 27 8.5 ref|NC_009314.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 27 8.5 ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 27 8.5 ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 27 8.5 >ref|NC_009320.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 28 Length = 1173595 Score = 43.5 bits (101), Expect = 9e-05 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = +3 Query: 129 YVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKI 184 + Q V + GG TC R +GA LGA++G+ IP W S T ++ V A ++ Sbjct: 1032765 FAQGVAQAIRLGGPTCQRAMLVGALLGAKLGVRHIPMEWLSATADHKPVSTMALEV 1032932 Score = 28.1 bits (61), Expect = 3.8 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Frame = +1 Query: 140 GGCTCS-RGSFIGACLGAQVGLEGIPA----SWSSRTQRYESVLEHAK 182 GG TC R F+ C+G V L +PA S R QR +++ A+ Sbjct: 1095760 GGPTCQHRAGFLHNCVGVDVQLCAVPARTRGSGDQRHQRSTDIIDSAR 1095903 >ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 30 Length = 1359875 Score = 31.6 bits (70), Expect = 0.35 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = -1 Query: 93 NLSKTPQELIPAVFVNTXGLPGAFQAALHGVLTATNY-VQAVRDTMSCG-GCTCSRGSFI 150 +L+K PQ+LI + T Q +H VLTA V A R + G GC CS S Sbjct: 107567 HLAKRPQQLIQVAYGFT------LQRVVHLVLTAAAR*VGADRRAFAKGRGCCCSACSAP 107406 Query: 151 GACLGA 156 G C GA Sbjct: 107405 GCCCGA 107388 Score = 28.5 bits (62), Expect = 2.9 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%) Frame = -3 Query: 117 QAALHGVLTATNYVQAVRDT----MSCGGCTC 144 Q + +L A N Q++RDT M CGGC C Sbjct: 511815 QPSWRPLLLARNLTQSMRDTWQLCMCCGGCHC 511720 Score = 28.5 bits (62), Expect = 2.9 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%) Frame = -1 Query: 117 QAALHGVLTATNYVQAVRDT----MSCGGCTC 144 Q + +L A N Q++RDT M CGGC C Sbjct: 509234 QPSWRPLLLARNLTQSMRDTWQLCMCCGGCHC 509139 >ref|NC_009294.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 1 Length = 235333 Score = 30.4 bits (67), Expect = 0.77 Identities = 26/95 (27%), Positives = 44/95 (46%) Frame = -3 Query: 20 MLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTALESVIRQLRDPNRKQAQDL 79 +L VEDA++V +N + RF HF+ + + I +P +A D+ Sbjct: 45989 ILHDVEDALQVLRNT---------SVRFAAHFLSD-------KEKISMGANPAYLRAPDI 45858 Query: 80 DQAVVGHIHQVKENLSKTPQELIPAVFVNTXGLPG 114 D+ VV Q ++S +PQ +PA+ + PG Sbjct: 45857 DREVVMSRSQ---SISTSPQRTLPAMTASILSSPG 45762 >ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 31 Length = 1602271 Score = 30.4 bits (67), Expect = 0.77 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Frame = -2 Query: 113 PGAFQAALHGVLTATNY----VQAVRDTMSCGGCTCSRG--SFIGACLGAQ 157 PGA A HGVL + VQA+ D CG C+ S G + G C G + Sbjct: 463788 PGAALAFSHGVLGRPPHERSDVQALSDPDGCGSCSRSTGFSPYAGRCGGLE 463636 >ref|NC_009308.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 16 Length = 696353 Score = 28.5 bits (62), Expect = 2.9 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Frame = +1 Query: 134 RDTMSCGGC-TCSRGSFIGACLGAQVGL--EGIPASWSSRTQRYESVL 178 RD S GG S +F+G C+ A EG+ WS R Y S + Sbjct: 379417 RDDFSAGGFFDASSAAFLGRCVSAPRWKR*EGVAGIWSRRAAEYSSFI 379560 Score = 28.1 bits (61), Expect = 3.8 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = -1 Query: 130 VQAVRDTMSCGGCTCSRG 147 V V D+ SC GCTC RG Sbjct: 55058 VDLVPDSASCHGCTCRRG 55005 Score = 27.7 bits (60), Expect = 5.0 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = +3 Query: 123 VLTATNYVQAVRDT----MSCGGCTC 144 +L+A N Q+++DT M CGGC C Sbjct: 82872 LLSARNLTQSMKDTWQLCMRCGGCHC 82949 >ref|NC_009321.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 29 Length = 1190324 Score = 27.7 bits (60), Expect = 5.0 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Frame = -1 Query: 116 FQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSF--IGACLGAQVGLEGIPASWSSRTQR 173 F HG T T Y++A + CG C S + A L A + SW++R Sbjct: 644291 FALRAHGTATHTCYLRAWSRRLCCGVCGGSSTCWWTTSAALLASRRWRLLGLSWAARATA 644112 Query: 174 YESVLEHAKK 183 +VL+ K+ Sbjct: 644111 AVTVLQRGKR 644082 >ref|NC_009276.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 6 Length = 526431 Score = 27.3 bits (59), Expect = 6.5 Identities = 16/45 (35%), Positives = 19/45 (42%) Frame = +1 Query: 125 TATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSS 169 T YV A R + GC C G G CL A + G P W + Sbjct: 87877 TTMTYVFARRACVWVCGCVC--GGVGGGCLTAPACVGGSPLQWGA 88005 >ref|NC_009295.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 2 Length = 332537 Score = 26.9 bits (58), Expect = 8.5 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%) Frame = -1 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGIPASW----SSRTQRYES 176 CG C C RG+ CL V L G W +R +R+ S Sbjct: 211358 CGVCLCHRGAAGTTCLPVAVFLCGCGCGWVCCRRARRRRWRS 211233 >ref|NC_009309.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 17 Length = 694732 Score = 26.9 bits (58), Expect = 8.5 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -2 Query: 132 AVRDTMSCGGCTCSRGS 148 + RD M C GCT RGS Sbjct: 508287 STRDEMRCNGCTSERGS 508237 Score = 26.9 bits (58), Expect = 8.5 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = +1 Query: 123 VLTATNYVQAVRDTMSCGGCTC----SRGSFIGACLGAQV 158 ++T+++ + T SCG C C SR SF G LG + Sbjct: 314359 MMTSSSCFTSSPSTASCGSCGCS*GKSRCSFCGLVLGEAI 314478 >ref|NC_009312.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 20 Length = 1668259 Score = 26.9 bits (58), Expect = 8.5 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 18 PEMLGRVEDAVRVTQNNDACVAETLAAAR 46 PE LGR + + V + + ACV LAA R Sbjct: 1114801 PECLGRSQKKIAVRRCSRACVGVALAACR 1114715 >ref|NC_009314.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 22 Length = 657844 Score = 26.9 bits (58), Expect = 8.5 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -3 Query: 121 HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGAC 153 HG L++T YV + +S GC + F+ C Sbjct: 537209 HGFLSSTLYVSHIFSLLSVTGCHAASDCFVVVC 537111 Score = 26.9 bits (58), Expect = 8.5 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +3 Query: 139 CGGCTCSRGSFIGACLGAQVGL 160 CGGC+C + C A VGL Sbjct: 232983 CGGCSCLASTTEAPCCSASVGL 233048 >ref|NC_009326.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 34 Length = 2012684 Score = 26.9 bits (58), Expect = 8.5 Identities = 19/63 (30%), Positives = 25/63 (39%) Frame = +1 Query: 111 GLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSR 170 G G AAL G A R +S G C+RG + L G P+SW + Sbjct: 344449 GAEGCCTAALFGADGTNQARDAARSGISRGSALCARG---------RGSLCGTPSSWLEQ 344601 Query: 171 TQR 173 +R Sbjct: 344602 QRR 344610 >ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 35 Length = 2686796 Score = 26.9 bits (58), Expect = 8.5 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -2 Query: 140 GGCTCSRGSFIGACLGAQVGLEGIPASWSSR 170 GGC + G+++G GAQV L W SR Sbjct: 1089304 GGCEAACGAWVGGAWGAQVALR-----WLSR 1089227 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 31,379,198 Number of sequences in database: 35 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,391,539 Number of Sequences: 35 Number of extensions: 150939 Number of successful extensions: 1130 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 1038 Number of HSP's gapped (non-prelim): 365 length of query: 189 length of database: 10,459,732 effective HSP length: 94 effective length of query: 95 effective length of database: 10,456,442 effective search space: 993361990 effective search space used: 993361990 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)