TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sel4  protein; PF14_0251  Plasmodium falciparum # QUERY
         (135 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01002293.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    27   6.9  
gb|AAXJ01001395.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    27   6.9  
gb|AAXJ01023337.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    27   9.1  

>gb|AAXJ01002293.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296711202,
            whole genome shotgun sequence
          Length = 6667

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 106  NSSFNHLNDYSNYYRPSLKNRFYNNRKS 133
            NS +N+ N Y+N Y     N  YNN  +
Sbjct: 6534 NSIYNNNNIYNNIYNNIYNNNIYNNNNN 6451


>gb|AAXJ01001395.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296575180,
             whole genome shotgun sequence
          Length = 11464

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 106   NSSFNHLNDYSNYYRPSLKNRFYNN 130
             N+ FN+ N Y+N Y     N  YNN
Sbjct: 10187 NNIFNNNNIYNNIYNNIFNNNIYNN 10113


>gb|AAXJ01023337.1| Perkinsus marinus ATCC 50983 strain ATCC 50983
           gcontig_1104296706032, whole genome shotgun sequence
          Length = 555

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 106 NSSFNHLNDYSNYYRPSLKNRFYNN 130
           N  +NH +DY+ YY     + +YNN
Sbjct: 452 NYYYNHDDDYNYYYNHDDHHNYYNN 378


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.308    0.124    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,119,080
Number of Sequences: 23491
Number of extensions: 29849
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of query: 135
length of database: 28,681,891
effective HSP length: 95
effective length of query: 40
effective length of database: 26,450,246
effective search space: 1058009840
effective search space used: 1058009840
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)