TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sel4  protein; PF14_0251  Plasmodium falciparum # QUERY
         (135 letters)

Database: genome.fa 
           1185 sequences; 56,660,578 total letters

Searching...................................................done

 ***** No hits found ******

  Database: genome.fa
    Posted date:  Jan 16, 2009 12:50 PM
  Number of letters in database: 56,660,578
  Number of sequences in database:  1185
  
Lambda     K      H
   0.308    0.124    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,052,000
Number of Sequences: 1185
Number of extensions: 7280
Number of successful extensions: 24
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 5
length of query: 135
length of database: 18,886,859
effective HSP length: 93
effective length of query: 42
effective length of database: 18,776,654
effective search space: 788619468
effective search space used: 788619468
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)