TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           10,690 sequences; 16,893,362 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAAJ01007675.1| Plasmodium chabaudi whole genome shotgun ass...    29   1.8  
emb|CAAJ01001814.1| Plasmodium chabaudi whole genome shotgun ass...    29   1.8  

>emb|CAAJ01007675.1| Plasmodium chabaudi whole genome shotgun assembly, contig
           PC_PH3074, whole genome shotgun sequence
          Length = 616

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -1

Query: 101 RVEYCSGXGYRRHYEEVAESLLRSLPP----ELREQQKGKKPFIKFVGVVYSVGAFR-EF 155
           R +Y     Y  + EE  + L   LPP      R QQK K P    V VVY+   F   +
Sbjct: 253 RFKYLPSAIY*AN*EENKKPLTNILPPFVYFSFRLQQKCKSPHFTLVLVVYAFNKFYVRW 74

Query: 156 IGNILSTGFLASIAISFFA 174
            G  ++   L  I +SFF+
Sbjct: 73  YGR*INYFQL*GILLSFFS 17


>emb|CAAJ01001814.1| Plasmodium chabaudi whole genome shotgun assembly, contig PC_RP1977,
            whole genome shotgun sequence
          Length = 5757

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = +2

Query: 101  RVEYCSGXGYRRHYEEVAESLLRSLPP----ELREQQKGKKPFIKFVGVVYSVGAFR-EF 155
            R +Y     Y  + EE  + L   LPP      R QQK K P    V VVY+   F   +
Sbjct: 4841 RFKYLPSAIY*AN*EENKKPLTNILPPFVYFSFRLQQKCKSPHFTLVLVVYAFNKFYVRW 5020

Query: 156  IGNILSTGFLASIAISFFA 174
             G  ++   L  I +SFF+
Sbjct: 5021 YGR*INYFQL*GILLSFFS 5077


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 16,893,362
  Number of sequences in database:  10,690
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,533,149
Number of Sequences: 10690
Number of extensions: 39898
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of query: 259
length of database: 5,631,120
effective HSP length: 92
effective length of query: 167
effective length of database: 4,647,640
effective search space: 776155880
effective search space used: 776155880
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)