TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           5966 sequences; 17,086,925 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAAI01000316.1| Plasmodium berghei whole genome shotgun asse...    28   2.5  
emb|CAAI01005647.1| UNBERG.2.21787, whole genome shotgun sequence      27   5.6  
emb|CAAI01004093.1| Plasmodium berghei whole genome shotgun asse...    27   9.6  
emb|CAAI01002574.1| Plasmodium berghei whole genome shotgun asse...    27   9.6  

>emb|CAAI01000316.1| Plasmodium berghei whole genome shotgun assembly, contig PB_RP0370,
           whole genome shotgun sequence
          Length = 1511

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 101 RVEYCSGXGYRRHYEEVAESLLRSLPP 127
           RV  CS   YR HY + A   LR +PP
Sbjct: 365 RVHLCSPGCYRTHYVDQAGFRLRDMPP 285


>emb|CAAI01005647.1| UNBERG.2.21787, whole genome shotgun sequence
          Length = 1238

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 157  GNILSTGFLASIAISFFAPFL 177
            G +LS  FL+ ++ SFF+PFL
Sbjct: 1171 GTLLSQPFLSFLSFSFFSPFL 1109


>emb|CAAI01004093.1| Plasmodium berghei whole genome shotgun assembly, contig PB_PH1455
           UNBERG.2.3801, whole genome shotgun sequence
          Length = 1095

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 28/99 (28%), Positives = 49/99 (49%)
 Frame = -3

Query: 39  SHRYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQH 98
           ++R K ++ ++E + K +   K E     +SKRE  L +  LEKR   + K+ +T+ +Q 
Sbjct: 940 NYRKKTIKQVREMN-KPIQDIKMEIEPIKKSKRETTLQIENLEKRSGVIDKS-ITNRIQ- 770

Query: 99  EVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKK 137
           E+  E  SG          AE  + ++   ++E  K KK
Sbjct: 769 EIE-ERISG----------AEDNIENIDTTVKENAKSKK 686


>emb|CAAI01002574.1| Plasmodium berghei whole genome shotgun assembly, contig PB_RP2939,
            whole genome shotgun sequence
          Length = 14230

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -2

Query: 141  KFVGVVYSVGAFREFIGNILSTGFLASIAISFFAPFLRGALPPHIAEW 188
            ++   +YS  + + F  N+ +  F  S+ +S F  ++   + PHI ++
Sbjct: 6222 EYTNCIYSCASLKHFSHNVAAMYFFLSLTLSIF*LYIIIFIYPHIYKY 6079


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 17,086,925
  Number of sequences in database:  5966
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,548,552
Number of Sequences: 5966
Number of extensions: 39833
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of query: 259
length of database: 5,695,641
effective HSP length: 93
effective length of query: 166
effective length of database: 5,140,803
effective search space: 853373298
effective search space used: 853373298
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)