TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           14,463 sequences; 46,187,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig_0014473                                                         30   2.9  
Contig_0002450                                                         29   5.0  
Contig_0011176                                                         28   6.5  
Contig_0001453                                                         28   8.5  

>Contig_0014473 
          Length = 2306

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = -1

Query: 89   KARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRS 124
            +A++  TV  E+ +++C G GYR +++  AE+L+RS
Sbjct: 1112 RAKMARTV--EITIQFCGG*GYRPYFDR-AEALIRS 1014


>Contig_0002450 
          Length = 8564

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = +3

Query: 54   KQMLHEKGEAFHHLRSKRELILAVLKLEKR-------EEALRKARVTDTVQHEVRVEYCS 106
            +Q  HE+G+   + R +R  + A  K  KR       EEA R  RV+ + +  V V  C 
Sbjct: 6717 RQQTHERGQ--RNARLRRRGLHAATKERKRRGGGEAVEEAXRAGRVSRSAKRRVMVLLCQ 6890

Query: 107  G 107
            G
Sbjct: 6891 G 6893


>Contig_0011176 
          Length = 2961

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -3

Query: 49  KEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGX 108
           K  ++K+ +HEK E     + KRE      K  KREE  +K +  +  +    +E     
Sbjct: 631 KMEEMKEKMHEKKEKRTEKKGKRE-----EKKGKREE--KKGKNAEKREKTDEMEGEQES 473

Query: 109 GYRRHYEEVAES-LLRSLPPELREQQK 134
           G +R+ +  +E  L R  P E REQ+K
Sbjct: 472 GRQRYLKGQSEKRLWRVSPLEDREQEK 392


>Contig_0001453 
          Length = 6815

 Score = 28.1 bits (61), Expect = 8.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 53   LKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKA 90
            L   L+++GE  H+LR+ R+L  A L+ +K     R+A
Sbjct: 4855 LPDALNQRGETPHYLRTGRKLASANLQRQKEPPVQRRA 4742


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 46,187,198
  Number of sequences in database:  14,463
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,081,089
Number of Sequences: 14463
Number of extensions: 151669
Number of successful extensions: 866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of query: 259
length of database: 15,395,732
effective HSP length: 100
effective length of query: 159
effective length of database: 13,949,432
effective search space: 2217959688
effective search space used: 2217959688
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)