TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           1696 sequences; 31,706,682 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mex318i07.p1k                                                         108   3e-24
mex457p19.q1k                                                          64   8e-11
mex251d04.q1k                                                          35   0.053
mex28h19.p1k                                                           29   3.8  
mex590l18.q1k                                                          28   6.4  
mex124k21.q1k                                                          28   8.4  

>mex318i07.p1k 
          Length = 75510

 Score =  108 bits (271), Expect = 3e-24
 Identities = 58/152 (38%), Positives = 89/152 (58%)
 Frame = +3

Query: 98  HEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIG 157
           HE++V YC+G GY +++E++ + L R LP             ++ VG  Y     R    
Sbjct: 24  HELKVLYCTG*GYAKYFEDMKQQLQRLLPNAQE---------VRIVGGTYPTPPARALAA 176

Query: 158 NILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFE 217
            + ST FL S+ ++     L   LPP +  +I Q RGM++GAGF++NMV  +L Q+GAFE
Sbjct: 177 KVCSTAFLTSLGVALAGQQL-AFLPPTVLNFIAQQRGMLIGAGFLLNMVGGALGQTGAFE 353

Query: 218 VYLNGSLIYSKLETGAVPTAETLADHILRQII 249
           V L+G LI+SKL+ GAVPT   +   +L++ +
Sbjct: 354 VSLDGELIFSKLQAGAVPTVAEIRRIVLQKTL 449


>mex457p19.q1k 
          Length = 1946

 Score = 64.3 bits (155), Expect = 8e-11
 Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
 Frame = -2

Query: 153  REFIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQ 212
            R  I   L   F  ++ ++     L+  +P  +   +   RG++   GFM+N+++ + LQ
Sbjct: 1945 RVLISKALQGAFFGTLGLALLGDQLK-FIPESVLAVLRARRGLITSTGFMLNVLSRAALQ 1769

Query: 213  SGAFEVYLNGSLIYSKLE-TGAVPTAETLADHILRQ-IISGTAAGTRTA 259
            + AFEV+L+G LIYS L  +G VPTA  L++ +L Q ++    A T+TA
Sbjct: 1768 NSAFEVFLDGKLIYSALNASGRVPTAALLSNLLLEQTLLKDYYAATKTA 1622



 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
 Frame = -2

Query: 34  ATDYSSHRYKYLEMLKEADLKQMLHEKGEA---FHHLRSKRELILAVLKLEKREEA 86
           A ++S   Y YL+ML E DL+QML+EK          R+K+EL+ AV ++E+RE+A
Sbjct: 379 AVEHSKDPYAYLDMLDEVDLQQMLYEKTHGQVQVSAFRNKKELVAAVRQIEEREDA 212


>mex251d04.q1k 
          Length = 233342

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 34/132 (25%), Positives = 51/132 (38%)
 Frame = -2

Query: 55     QMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGXGYRRHY 114
              Q LHE+G   H   S  + I  ++K  ++ E    +R      H+ + + C+G G ++  
Sbjct: 135253 QPLHEEGR--HPFPSTSKKIKKIVKTPRKNENKEPSR---NKTHQKKRQMCAGEGEQKRA 135089

Query: 115    EEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGNILSTGFLASIAISFFA 174
                      R    E    +K K+PF  FV  V S  +              ASI   FF+
Sbjct: 135088 RRWRSRRGREGGAEAEAGEKNKRPFCPFVPSVPSPASSS------------ASIPSFFFS 134945

Query: 175    PFLRGALPPHIA 186
                 R    PH A
Sbjct: 134944 RHSRARRKPHAA 134909


>mex28h19.p1k 
          Length = 50963

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 23/77 (29%), Positives = 34/77 (44%)
 Frame = +3

Query: 73    LILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQ 132
             L+LAVL +  +     +      VQHEV  +YC G    RH   + E LLR   P     
Sbjct: 39696 LVLAVLHVNPQPNPAER----HCVQHEVDAQYCRGEWRDRH---IWEGLLRD--PLRVGI 39848

Query: 133   QKGKKPFIKFVGVVYSV 149
             +      ++  G+ Y+V
Sbjct: 39849 ESSSASLLRLHGIPYAV 39899


>mex590l18.q1k 
          Length = 8211

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 164  FLASIAISFFAPFLRGALPPHI 185
            FLA +  SFF  F RGALPPH+
Sbjct: 3852 FLACLFFSFF--FGRGALPPHL 3911


>mex124k21.q1k 
          Length = 3256

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 90  ARVTDTVQHEVRVEYCSGXGYRRHYEEVA 118
           AR    VQHEV V + SG   RRH E  A
Sbjct: 846 ARHRGDVQHEVGVAHASGDVRRRHLEVAA 932


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 31,706,682
  Number of sequences in database:  1696
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,418,070
Number of Sequences: 1696
Number of extensions: 119835
Number of successful extensions: 728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 221
length of query: 259
length of database: 10,568,894
effective HSP length: 98
effective length of query: 161
effective length of database: 10,402,686
effective search space: 1674832446
effective search space used: 1674832446
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)