TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927] PARTIALLY FROM XP_844760.1 (259 letters) Database: genome.fa 35 sequences; 31,379,198 total letters Searching...................................done Score E Sequences producing significant alignments: (bits) Value ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 110 1e-24 ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 28 5.0 ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 28 6.5 ref|NC_009324.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 28 6.5 ref|NC_009325.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 28 8.5 >ref|NC_009319.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 27 Length = 1217395 Score = 110 bits (275), Expect = 1e-24 Identities = 61/155 (39%), Positives = 91/155 (58%) Frame = +1 Query: 95 TVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFRE 154 +V H++ + YC+G GY +++E++ + L R LP ++ VG Y R Sbjct: 122362 SVVHKLEILYCTG*GYAKYFEDMKQQLQRVLP---------NAGDVQIVGGTYPTPPARA 122514 Query: 155 FIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSG 214 + ST FLAS+ ++ L LPP +I Q RGM+VG GF++NM+ SSL Q+G Sbjct: 122515 LAAKVCSTAFLASLGMALAGGQL-AFLPPAALNFIVQQRGMLVGTGFLLNMIGSSLTQTG 122691 Query: 215 AFEVYLNGSLIYSKLETGAVPTAETLADHILRQII 249 AFEV L+G LI+SKL+ GAVPT E + IL++ + Sbjct: 122692 AFEVTLDGELIFSKLQAGAVPTVEVMRRIILQKTL 122796 Score = 70.1 bits (170), Expect = 1e-12 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 1/153 (0%) Frame = +2 Query: 98 HEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIG 157 HEV + GY +EE+ + L S L + +G V + R + Sbjct: 120077 HEVLAHHNEANGYGSEFEELRKELQESEAVSLPNLAD-----LDIIGQVSPISPNRVLVS 120241 Query: 158 NILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFE 217 L F A++ ++F ++ +P + Q R +++ ++++++ + L S AFE Sbjct: 120242 KALQGAFFATLGVAFMGDQIK-FIPESARAVLLQRRSLIISGSLLLSVLSRAALPSNAFE 120418 Query: 218 VYLNGSLIYSKLETGA-VPTAETLADHILRQII 249 V+L+G LIYS L+TG VPTAE L++ +L Q + Sbjct: 120419 VFLDGELIYSALDTGGRVPTAELLSNLLLEQTL 120517 Score = 45.8 bits (107), Expect = 3e-05 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 3/48 (6%) Frame = +1 Query: 42 YKYLEMLKEADLKQMLHEKGEA---FHHLRSKRELILAVLKLEKREEA 86 Y YL ML E DL+Q+LHEK RSK EL+ AV K+E+RE+A Sbjct: 121927 YAYLGMLDEVDLQQILHEKTHGQVQVSAFRSKEELVAAVRKIEEREDA 122070 Score = 28.5 bits (62), Expect = 5.0 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = -3 Query: 89 KARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQ-KGKK 137 KAR T+T +H + E S G R EVA +R + P LRE++ KGKK Sbjct: 334727 KAR-TETRRHTCKDEDESKGG-REDMTEVAARFIRLVSPHLREEELKGKK 334584 >ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 30 Length = 1359875 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 83 REEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRS 124 R A+R++ D+ EVR C G+RR ++ +LLR+ Sbjct: 624681 RSVAIRRSTTADSPSMEVRARVCCVCGHRRTAAQMRCTLLRT 624806 >ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 31 Length = 1602271 Score = 28.1 bits (61), Expect = 6.5 Identities = 16/70 (22%), Positives = 31/70 (44%) Frame = +1 Query: 44 YLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVE 103 YL ++ A+ LH + + F+H ++++ + LR+ V + HEV Sbjct: 1003078 YLLLIGGAETHNPLHARLQRFNHFLAQQQ--------RRHPHPLREVGVHHVLLHEVCPP 1003233 Query: 104 YCSGXGYRRH 113 +C G + H Sbjct: 1003234 HCEGQWQKEH 1003263 >ref|NC_009324.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 32 Length = 1579615 Score = 28.1 bits (61), Expect = 6.5 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -2 Query: 56 MLHEKGEAFHHLRSKRELILAVLKLE--KREEALRKARVTDTVQHEVRVEYC 105 +LH HH R++ + +L +L+ E +R AR T TV +VRV C Sbjct: 223968 VLHSVPRILHHFRNRGKSLLVILRKESDRRPFLPGAARATHTV--DVRVHSC 223819 >ref|NC_009325.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 33 Length = 1504429 Score = 27.7 bits (60), Expect = 8.5 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 87 LRKARVTDTVQHEVRVEYCSGXGYR-RHYEEVAESLLRSLPPELREQQKG 135 LR A ++DT +HE V C G +R + + + +L L EL+ + G Sbjct: 755490 LRGAHISDTQRHEPHVAECDGEQHRVVCFPSIQQCILERLLGELKLTEGG 755341 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 31,379,198 Number of sequences in database: 35 Lambda K H 0.321 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,335,377 Number of Sequences: 35 Number of extensions: 120883 Number of successful extensions: 745 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 694 Number of HSP's gapped (non-prelim): 199 length of query: 259 length of database: 10,459,732 effective HSP length: 98 effective length of query: 161 effective length of database: 10,456,302 effective search space: 1683464622 effective search space used: 1683464622 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)