TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           6902 sequences; 42,263,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AANW02000166.1| Entamoeba invadens IP1 gcontig_1105074713641,...    28   8.2  
gb|AANW02000006.1| Entamoeba invadens IP1 gcontig_1105074720924,...    28   8.2  

>gb|AANW02000166.1| Entamoeba invadens IP1 gcontig_1105074713641, whole genome shotgun
             sequence
          Length = 37095

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 11/21 (52%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
 Frame = +2

Query: 128   ELREQQKG-KKPFIKFVGVVY 147
             E+REQQ G ++PF+KFV +++
Sbjct: 33845 EVREQQNGLQEPFVKFVSIIH 33907


>gb|AANW02000006.1| Entamoeba invadens IP1 gcontig_1105074720924, whole genome shotgun
             sequence
          Length = 146342

 Score = 28.1 bits (61), Expect = 8.2
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 41    RYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALR--KARVTDTVQH 98
             RY+   M  E ++K+ML +K  +   +    + +   LKL K+E+  R  K R+     +
Sbjct: 55913 RYESYSMRDEHEIKEMLKQKKVSLSGVHRILKRLGVTLKLVKKEQFNRNVKVRIEQRKMY 55734

Query: 99    EVRVEY 104
                +EY
Sbjct: 55733 ADHIEY 55716


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 42,263,565
  Number of sequences in database:  6902
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,350,211
Number of Sequences: 6902
Number of extensions: 91859
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 297
length of query: 259
length of database: 14,087,855
effective HSP length: 100
effective length of query: 159
effective length of database: 13,397,655
effective search space: 2130227145
effective search space used: 2130227145
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)