TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927] PARTIALLY FROM XP_844760.1 (259 letters) Database: genome.fa 13,554 sequences; 30,504,940 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AANV02000572.1| Entamoeba dispar SAW760 gcontig_1104316534056... 30 1.5 gb|AANV02002219.1| Entamoeba dispar SAW760 gcontig_1104316516772... 30 1.9 gb|AANV02001789.1| Entamoeba dispar SAW760 gcontig_1104316509644... 30 1.9 gb|AANV02000867.1| Entamoeba dispar SAW760 gcontig_1104316565958... 28 4.2 gb|AANV02000032.1| Entamoeba dispar SAW760 gcontig_1104316566080... 28 4.2 gb|AANV02001078.1| Entamoeba dispar SAW760 gcontig_1104316561516... 28 7.2 gb|AANV02000491.1| Entamoeba dispar SAW760 gcontig_1104316512440... 28 7.2 gb|AANV02000486.1| Entamoeba dispar SAW760 gcontig_1104316494834... 28 7.2 gb|AANV02001367.1| Entamoeba dispar SAW760 gcontig_1104316562282... 27 9.4 gb|AANV02000143.1| Entamoeba dispar SAW760 gcontig_1104316568980... 27 9.4 >gb|AANV02000572.1| Entamoeba dispar SAW760 gcontig_1104316534056, whole genome shotgun sequence Length = 9657 Score = 30.0 bits (66), Expect = 1.5 Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 5/138 (3%) Frame = -3 Query: 46 EMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLE---KRE--EALRKARVTDTVQHEV 100 E LKE ++K+++HE + +E++ K++ KRE + + +T + Sbjct: 8482 EELKEEEIKRLIHEIEIKIEDINEYKEILKKTFKIKNEIKREVNRRMEEELITHQWKDIE 8303 Query: 101 RVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGNIL 160 E +G + +E E ++R E ++Q+ ++F+ Y+ + I NI+ Sbjct: 8302 LKELIAGINKKEEIQE--EEVIRIFKEEHMKEQED----VQFINYYYNKNKVYQII-NII 8144 Query: 161 STGFLASIAISFFAPFLR 178 +T + I + + +++ Sbjct: 8143 NTNEIVIITLDDYYHYIK 8090 >gb|AANV02002219.1| Entamoeba dispar SAW760 gcontig_1104316516772, whole genome shotgun sequence Length = 2082 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/45 (26%), Positives = 25/45 (55%) Frame = -1 Query: 41 RYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREE 85 R K LKE ++K+++HE ++ +E+I + K++K + Sbjct: 1998 RNKIKNQLKEEEIKRLIHEIDIKIENINEYKEIIKKIFKIKKENK 1864 >gb|AANV02001789.1| Entamoeba dispar SAW760 gcontig_1104316509644, whole genome shotgun sequence Length = 2543 Score = 29.6 bits (65), Expect = 1.9 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Frame = -3 Query: 43 KYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLE-KREEALRKARVTDTVQHEVR 101 K LKE ++K+++HE + +E+I K++ K + + + + + H+ + Sbjct: 1845 KLRNQLKEEEIKRLIHEIEIKIEDINEYKEIIKKTFKIKNKIKREVNRRNEEELITHQWK 1666 Query: 102 -VEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGNIL 160 +E EE+ E + + ++EQ+ ++F+ Y+ + I NI+ Sbjct: 1665 DIELKELIAGINKKEEIQEIIRINKEEHMKEQED-----VQFINYYYNKNKIHQII-NII 1504 Query: 161 ST 162 +T Sbjct: 1503 NT 1498 >gb|AANV02000867.1| Entamoeba dispar SAW760 gcontig_1104316565958, whole genome shotgun sequence Length = 6278 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +1 Query: 43 KYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREE-ALRKARVTDTVQHEV 100 K LKE ++K+++HE + +E+I + K++ + + K +T+ H++ Sbjct: 1834 KLRNQLKEEEIKRLIHEFDIKIKDINEYKEIIKKIFKIKNENKIEVNKRNEEETITHKL 2010 >gb|AANV02000032.1| Entamoeba dispar SAW760 gcontig_1104316566080, whole genome shotgun sequence Length = 48301 Score = 28.5 bits (62), Expect = 4.2 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%) Frame = -1 Query: 117 VAESLLRSLPPELREQ------QKGKKPFIKFVGVVYSVGAFREFIGNILS 161 VAE++ SL EL EQ + PFI+ +G + S F+ FI ILS Sbjct: 9154 VAENIT-SLISELAEQTNNLGFDEASSPFIQIIGPIPSPKHFKSFISTILS 9005 >gb|AANV02001078.1| Entamoeba dispar SAW760 gcontig_1104316561516, whole genome shotgun sequence Length = 4858 Score = 27.7 bits (60), Expect = 7.2 Identities = 27/139 (19%), Positives = 63/139 (45%), Gaps = 11/139 (7%) Frame = +1 Query: 35 TDYSSHRYKYLE-----MLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKR-EEALR 88 T Y K LE LKE ++K+++HE + +E++ K++ + + Sbjct: 769 TLYKCFTLKLLERKLRGQLKEEEIKRLIHEIDIKIEDINEYKEILKKTYKIKNEIKREVN 948 Query: 89 KARVTDTVQHEVR----VEYCSGXGYRRHYEEVAESLLR-SLPPELREQQKGKKPFIKFV 143 + + + H+++ E +G + +E E ++R + +++EQ+ ++F+ Sbjct: 949 RRTEEEIITHKLKDIELKELIAGINKKEEIQE--EEVIRINKEEDMKEQED-----VQFI 1107 Query: 144 GVVYSVGAFREFIGNILST 162 Y+ + I NI++T Sbjct: 1108NYYYNKNKIHQII-NIINT 1161 >gb|AANV02000491.1| Entamoeba dispar SAW760 gcontig_1104316512440, whole genome shotgun sequence Length = 11107 Score = 27.7 bits (60), Expect = 7.2 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 10/138 (7%) Frame = +2 Query: 35 TDYSSHRYKYLEM-----LKEADLKQMLHEKGEAFHHLRSKRELILAVLKLE---KRE-- 84 T Y K LE+ LKE ++K+++HE + +E++ K++ KRE Sbjct: 7805 TFYKCFALKLLEIKLRNQLKEEEIKRLIHEIDIKIEDINEYKEILKKTYKIKNEIKREVN 7984 Query: 85 EALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVG 144 + + +T ++ E +G + +E E ++R E + Q+ ++F+ Sbjct: 7985 RRIEEELITHKLKDIELKELIAGINKKEEIQE--EEVIRIFKEEDMK*QED----VQFIN 8146 Query: 145 VVYSVGAFREFIGNILST 162 Y+ + I NI++T Sbjct: 8147 YYYNKNKIHQII-NIINT 8197 >gb|AANV02000486.1| Entamoeba dispar SAW760 gcontig_1104316494834, whole genome shotgun sequence Length = 11235 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 6/73 (8%) Frame = +3 Query: 35 TDYSSHRYKYLEM-----LKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREE-ALR 88 T Y+ K LE+ LKE ++K+++HE + +E+I K++ + + Sbjct: 4401 TFYNCFALKLLEIKLRNQLKEEEIKRLIHEIDIKIEDINEYKEIIKKTYKIKNENKIEIN 4580 Query: 89 KARVTDTVQHEVR 101 K + + + H+++ Sbjct: 4581 KRKEEEIITHKLK 4619 >gb|AANV02001367.1| Entamoeba dispar SAW760 gcontig_1104316562282, whole genome shotgun sequence Length = 3633 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = +1 Query: 45 LEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRK 89 +EM K+AD+K+ + E F ++ ++ V EKR+E +++ Sbjct: 3250 MEMNKQADIKREVLSLREKFEKVKPNDNILEIVKDKEKRKERIKQ 3384 >gb|AANV02000143.1| Entamoeba dispar SAW760 gcontig_1104316568980, whole genome shotgun sequence Length = 26041 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +3 Query: 46 EMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREE 85 + L+E DLK+ L + F HL SK + +LK +K ++ Sbjct: 14331 KQLREKDLKKKLRN*QQKFKHLNSKLMHQVVLLKKKKNKD 14450 Database: genome.fa Posted date: Jan 16, 2009 12:50 PM Number of letters in database: 30,504,940 Number of sequences in database: 13,554 Lambda K H 0.321 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,090,955 Number of Sequences: 13554 Number of extensions: 66279 Number of successful extensions: 250 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 244 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 250 length of query: 259 length of database: 10,168,313 effective HSP length: 97 effective length of query: 162 effective length of database: 8,853,575 effective search space: 1434279150 effective search space used: 1434279150 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)