TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           4707 sequences; 47,745,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pathogen_EIMER_contig_00029452 - eimerbac20h5Be10.p1ka low_quali...    35   0.10 
pathogen_EIMER_contig_00031144 - eimer-912d02.q1ka low_quality_r...    30   3.2  
pathogen_EIMER_contig_00021084 - eimer-1157a06.q1k low_quality_r...    29   5.5  

>pathogen_EIMER_contig_00029452 - eimerbac20h5Be10.p1ka low_quality_removed
          Length = 42137

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +1

Query: 190   EQHRGMVVGAGFMMNMVASS-LLQSGAFEVYLNGSLIYSKLE 230
             E +R ++V A F+   V SS LLQ+GAFE+Y    LI+S L+
Sbjct: 37837 EANRLLLVAAVFVAAAVCSSFLLQTGAFEIYYERDLIWSALD 37962


>pathogen_EIMER_contig_00031144 - eimer-912d02.q1ka low_quality_removed
          Length = 2732

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 83  REEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPP 127
           RE    + R T++  HE+    C G G + H   ++   LRS  P
Sbjct: 140 RERRSGRGRRTESPNHELGFRVCRGRGLQEHSTHISPFSLRSRSP 274


>pathogen_EIMER_contig_00021084 - eimer-1157a06.q1k low_quality_removed
          Length = 156826

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -3

Query: 62    EAFHHLRSKR-ELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAES 120
             E +  +  KR +L LA  +LEK++  LR AR     QH             R+Y EV E 
Sbjct: 64886 EVYRDVEPKRLKLRLAEEELEKKQTDLRLARGRSAQQHACARHQLRARAKCRNYVEVWEF 64707

Query: 121   LLRSLPPELREQQKGKK 137
             L R    + R ++  K+
Sbjct: 64706 LCRLEDIQKRLEELNKQ 64656



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 160    LSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNM 205
              L TG L SIA     PF + + PP +      H   +VG G +  M
Sbjct: 113782 LVTGVLRSIAFCTIGPFQKVSFPPRVT---AAHSAFLVGVGEIAKM 113654


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 47,745,626
  Number of sequences in database:  4707
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,732,891
Number of Sequences: 4707
Number of extensions: 139002
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 436
length of query: 259
length of database: 15,915,208
effective HSP length: 101
effective length of query: 158
effective length of database: 15,439,801
effective search space: 2439488558
effective search space used: 2439488558
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)