TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           799 sequences; 32,967,507 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_140                                                           28   8.8  

>scaffold_140 
          Length = 71951

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 37    YSSHRYKYLEMLKEADLKQMLHEK 60
             Y +H Y+YL MLK  ++ Q  H K
Sbjct: 18923 YQTHHYEYLMMLKNLEIHQTHHLK 18852


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:50 PM
  Number of letters in database: 32,967,507
  Number of sequences in database:  799
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,452,248
Number of Sequences: 799
Number of extensions: 74228
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 35
length of query: 259
length of database: 10,989,169
effective HSP length: 98
effective length of query: 161
effective length of database: 10,910,867
effective search space: 1756649587
effective search space used: 1756649587
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)