TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927] PARTIALLY FROM XP_844760.1 (259 letters) Database: genome.fa 1185 sequences; 56,660,578 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_44 59 6e-09 scaffold_61 36 0.054 scaffold_6 32 0.60 scaffold_3 30 3.0 scaffold_730 30 3.9 scaffold_8 29 5.1 scaffold_10 29 6.6 scaffold_22 28 8.7 scaffold_9 28 8.7 >scaffold_44 Length = 313712 Score = 58.9 bits (141), Expect = 6e-09 Identities = 43/139 (30%), Positives = 69/139 (49%) Frame = +2 Query: 99 EVRVEYCSGXGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGN 158 EV V+ C+ G +R+Y E+ + L P LR + P +VG F Sbjct: 140396 EVLVKLCTS*GTQRNYLELRK-FLEDAYPGLRSVAAEQYP-------PPAVGVFAAQAAG 140551 Query: 159 ILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFEV 218 + +A + L GA P + +++ M GA +M N VA+ ++ +GAFE+ Sbjct: 140552 MAQVACVALLLGGEKVFQLFGAATPGWYHSVAENKMMAFGAVWMANNVAAQMVATGAFEI 140731 Query: 219 YLNGSLIYSKLETGAVPTA 237 ++NG L +SKLETG +P+A Sbjct: 140732 HVNGELAFSKLETGRLPSA 140788 >scaffold_61 Length = 124364 Score = 35.8 bits (81), Expect = 0.054 Identities = 22/56 (39%), Positives = 27/56 (48%) Frame = -3 Query: 52 DLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSG 107 DL H G H LR + +L VL LE+RE L V + H+VRVE G Sbjct: 88899 DLADEAHVVGHDAHVLRVVLDHVLGVLALERREGPLEALLVALVLAHDVRVELVVG 88732 >scaffold_6 Length = 2755913 Score = 32.3 bits (72), Expect = 0.60 Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 9/102 (8%) Frame = -3 Query: 40 HRYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARV--TDTVQ 97 HR + EA + L E G R REL+ AVL E+RE+ R+A V + Q Sbjct: 915372 HRLRRDGRRGEAQVAARLEEHGVEQAPERPARELVDAVLGREEREDQ-RQADVGHREVAQ 915196 Query: 98 HEVRVEYCS-------GXGYRRHYEEVAESLLRSLPPELREQ 132 ++RV G R + +LR +PP LR Q Sbjct: 915195 EQLRVALAERGHVVGLGVLEARQRRSIQNVVLRDVPPLLRRQ 915070 >scaffold_3 Length = 3001400 Score = 30.0 bits (66), Expect = 3.0 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 13/89 (14%) Frame = -3 Query: 44 YLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALR-------------KA 90 Y E+ D+++ LHE + H+ + + L +RE+ALR +A Sbjct: 2660346 YTELTPPRDVEEPLHE--DVVQHVERRLAAVDGQEPLVEREDALRAHGPRDAVRGPSVRA 2660173 Query: 91 RVTDTVQHEVRVEYCSGXGYRRHYEEVAE 119 RV +HE R++ G R E A+ Sbjct: 2660172 RVVGPPRHEPRLDDVEGAARRGRRETAAQ 2660086 >scaffold_730 Length = 6007 Score = 29.6 bits (65), Expect = 3.9 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -3 Query: 79 KLEKREEALRKARVTDTVQHEVRVEYCSGXGYRRHY 114 +L++R+ AL + + HEV V C+G G RRH+ Sbjct: 1625 RLQRRQLAL--GAMLEEQSHEVGVRLCTGHGQRRHH 1524 >scaffold_8 Length = 1961717 Score = 29.3 bits (64), Expect = 5.1 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Frame = +2 Query: 65 HHLRSKRELILAVLKLEKREE---ALRKARVTDTVQHEVRVEYCSGXGYRRH-YEEVAES 120 H R REL+ A + +R+E A+R AR R + G R E V E Sbjct: 128576 HERREARELVAAKVGAAERDEVHGAVRNARAAAAEVRPGRGDVAHRQGDRLDAVEVVLEP 128755 Query: 121 LLRSLPPELREQQKGKK 137 L R LPP + + ++ ++ Sbjct: 128756 LARRLPPAVEQGRRRRR 128806 >scaffold_10 Length = 1654512 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +3 Query: 77 VLKLEKR--EEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELRE 131 V+++ +R EE L + +V E RV+ + RR EVAE L PP + E Sbjct: 1252875 VVRVARRAAEEPLERRQVRALEVPEARVDVAAALDERRARREVAEGRLGQRPPAVEE 1253045 >scaffold_22 Length = 725242 Score = 28.5 bits (62), Expect = 8.7 Identities = 21/63 (33%), Positives = 29/63 (46%) Frame = -3 Query: 72 ELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGXGYRRHYEEVAESLLRSLPPELRE 131 +L+ V + RE A +ARV D V+ EVR+E G R A PPE R Sbjct: 717644 DLVAGVARRALRELAQEEARVRDGVEREVRLEAPPAPGRLRGQRGPA-------PPERRR 717486 Query: 132 QQK 134 ++ Sbjct: 717485 VRR 717477 >scaffold_9 Length = 1602328 Score = 28.5 bits (62), Expect = 8.7 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Frame = -1 Query: 122 LRSLPPELREQQKGKKPF-------IKFVGVVYSVGAFREFIGNILSTGFLASIAISFFA 174 LR LPP R +P + F G + G F + S A+ ++SFFA Sbjct: 810907 LRPLPPSPRPLPPSPRPLAAPSFFALPFAGAGAAAGGF------VTSISIFAASSLSFFA 810746 Query: 175 PFLRGALPPHIA 186 LRG P A Sbjct: 810745 LPLRGGRSPSAA 810710 Database: genome.fa Posted date: Jan 16, 2009 12:50 PM Number of letters in database: 56,660,578 Number of sequences in database: 1185 Lambda K H 0.321 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,269,008 Number of Sequences: 1185 Number of extensions: 155808 Number of successful extensions: 1020 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 33 Number of HSP's that attempted gapping in prelim test: 588 Number of HSP's gapped (non-prelim): 731 length of query: 259 length of database: 18,886,859 effective HSP length: 102 effective length of query: 157 effective length of database: 18,765,989 effective search space: 2946260273 effective search space used: 2946260273 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 62 (28.5 bits)