TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo sapiens # Complete (278 letters) Database: genome.fa 35 sequences; 31,379,198 total letters Searching...................................done Score E Sequences producing significant alignments: (bits) Value ref|NC_009311.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 31 1.1 ref|NC_009318.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 31 1.1 ref|NC_009325.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 30 1.5 ref|NC_009306.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 30 1.9 ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 30 2.5 ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 29 3.2 ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 29 4.2 ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo... 28 7.2 >ref|NC_009311.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 19 Length = 754788 Score = 30.8 bits (68), Expect = 1.1 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = +1 Query: 43 KHFLGRRRRGQPEPEVELNSEGEEVPPDDPPIC 75 +H L + P P EL S GE VPP PP C Sbjct: 712039 RHPLRGVKSAAPTPSTELASAGE*VPPSLPPSC 712137 >ref|NC_009318.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 26 Length = 1008282 Score = 30.8 bits (68), Expect = 1.1 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Frame = -2 Query: 13 CAQTASCLVLF----PRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGE 65 C+Q V+F P +F LWLL FL + + RRRRG+ E N++ E Sbjct: 695549 CSQVRDARVVFSLLPPAISPLSFFLWLLRFLFLCSYRRWRRRRGRGMG*AEPNAQ*E 695379 Score = 28.5 bits (62), Expect = 5.5 Identities = 14/41 (34%), Positives = 16/41 (39%) Frame = +2 Query: 174 EAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCA 214 E H GW D P +RS D + Q G GCA Sbjct: 36170 ETHTKKGWRKRDKREAPPNNRSSRDTKAKNNATQAGEMGCA 36292 >ref|NC_009325.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 33 Length = 1504429 Score = 30.4 bits (67), Expect = 1.5 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = -2 Query: 194 RSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQS 240 R ED VSA + GA + V NSSSS Y YFE ++ I S Sbjct: 194787 RQEEDVVSA----RMGAHDASTVASAALNSSSSPYALYFEVIFGITS 194659 Score = 28.5 bits (62), Expect = 5.5 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -3 Query: 190 IPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSA 227 +P+ LED A V Q+G C L+ TM+ S++S+ Sbjct: 374768 LPESDDLEDEGDAEDVRQRGTAVCVLLCGTMSCSTASS 374655 >ref|NC_009306.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 14 Length = 654078 Score = 30.0 bits (66), Expect = 1.9 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +3 Query: 48 RRRRGQPEPEVELNSEGEEVPPDDPPICVSDD 79 RRRRGQ PE L+ G + P P + SDD Sbjct: 93534 RRRRGQRPPEPRLHQLGGRLLPLYPSVTASDD 93629 >ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 31 Length = 1602271 Score = 29.6 bits (65), Expect = 2.5 Identities = 17/63 (26%), Positives = 29/63 (46%) Frame = +1 Query: 150 RMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQG 209 R +F R+ ++ D I + +H DGW P+I+ + D + AR ++G Sbjct: 1193623 RRRSFSRITSRSFSVPDTFRIQLSRSHAEDGWCDVQQPFILIS-VEVTDEKTDARSTRRG 1193799 Query: 210 APG 212 A G Sbjct: 1193800 A*G 1193808 Score = 29.6 bits (65), Expect = 2.5 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 6/43 (13%) Frame = -3 Query: 47 GRRRRGQPEPEVELNS------EGEEVPPDDPPICVSDDNRLC 83 G R G P V +S G+E P DDPP C RLC Sbjct: 142241 GEERAGVRVPCVSASSPSCRWPRGDECPVDDPPCCTLKRVRLC 142113 >ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 35 Length = 2686796 Score = 29.3 bits (64), Expect = 3.2 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -2 Query: 44 HFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQK 96 H G+R R P P E P D+ ICVS R C A++ ++ +K Sbjct: 1494976 HMQGKRLRCPPPPLTTTRCERRIRPSDEVSICVSLCIRTCLSAAVPCLYDVKK 1494818 Score = 27.7 bits (60), Expect = 9.4 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -1 Query: 14 AQTASCLVLFPRFLGTAFM-LWLLDFLCIRKHFLGRRR 50 AQ + V R LG + + LL +LC R++FL RRR Sbjct: 479246 AQATNSYVEIKRSLGQQLLQMTLLGYLCRRQYFLWRRR 479133 >ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 10 Length = 612479 Score = 28.9 bits (63), Expect = 4.2 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 11/63 (17%) Frame = -2 Query: 190 IPQHRSLEDRVSAA----------RVL-QQGAPGCALVLDTMANSSSSAYGAYFERLYVI 238 +P H S E++ AA +VL QQG A ++D M N + GA+ +LY + Sbjct: 448870 VPLH-SFENKAGAASKQSNWFVLRKVLRQQGVEVSAAMVDGMMNGADGCAGAFLRQLYTV 448694 Query: 239 QSG 241 +G Sbjct: 448693 LTG 448685 >ref|NC_009322.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 30 Length = 1359875 Score = 28.1 bits (61), Expect = 7.2 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -1 Query: 40 CIRKHFLGRRRRGQPEPE 57 C+R FLGRRR GQP+P+ Sbjct: 1288649 CVR--FLGRRRGGQPQPK 1288602 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 31,379,198 Number of sequences in database: 35 Lambda K H 0.322 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,610,995 Number of Sequences: 35 Number of extensions: 376133 Number of successful extensions: 1611 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 1473 Number of HSP's gapped (non-prelim): 400 length of query: 278 length of database: 10,459,732 effective HSP length: 99 effective length of query: 179 effective length of database: 10,456,267 effective search space: 1871671793 effective search space used: 1871671793 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)