TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo sapiens # Complete (278 letters) Database: genome.fa 7809 sequences; 167,727,055 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_253 63 1e-09 scaffold_164 63 1e-09 scaffold_1614 55 4e-07 scaffold_405 55 4e-07 scaffold_1 48 4e-05 scaffold_494 43 0.001 scaffold_7 43 0.001 scaffold_74 36 0.17 scaffold_386 35 0.29 scaffold_120 34 0.50 scaffold_36 34 0.50 scaffold_176 33 1.4 scaffold_172 31 4.2 scaffold_40 31 4.2 scaffold_10 31 5.5 scaffold_179 30 7.2 scaffold_159 30 7.2 scaffold_84 30 7.2 scaffold_455 30 9.4 scaffold_71 30 9.4 scaffold_56 30 9.4 scaffold_23 30 9.4 scaffold_11 30 9.4 >scaffold_253 Length = 194081 Score = 62.8 bits (151), Expect = 1e-09 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Frame = -1 Query: 106 GGPAPNSEVVLPDGFQSQHILDYAQGNRP---LVLNFGSCTXPPFMARMSAFQRLVTKY- 161 G AP+ V DG ++ G+ P VLNFGS T PP++++ A + Y Sbjct: 9740 GSLAPDGPVCTLDGVETTLHGAVRAGSGPRKLTVLNFGSYT*PPYVSKGPALVTSMRPYL 9561 Query: 162 -QRDVDFLIIYIEEAHPSDGWVTTDSPYI-IPQHRSLEDRVS-AARVLQQGAPGCA---- 214 + ++YI EAHP GW + I Q ++L R++ AA+ + A CA Sbjct: 9560 DAGSLSLFLVYIREAHPEGGWAIPAADGICYRQPKTLASRLAVAAKFAEHQAEWCAGVPM 9381 Query: 215 LVLDTMANSSSSAYGAYFERLYVI-QSGTIMYQGGRGPDGYQVSELRTWLE 264 LV D N+ AY A ERL V+ + +++ G+GP Y V +L +++ Sbjct: 9380 LVDDPTTNALDIAYEAPPERLVVLDEQLNVVFFSGQGPFQYSVPKLAAFVK 9228 >scaffold_164 Length = 300493 Score = 62.8 bits (151), Expect = 1e-09 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Frame = +3 Query: 106 GGPAPNSEVVLPDGFQSQHILDYAQGNRP---LVLNFGSCTXPPFMARMSAFQRLVTKY- 161 G AP+ V DG ++ G+ P VLNFGS T PP++++ A + Y Sbjct: 288582 GSLAPDGPVCTLDGVETTLHGAVRAGSGPRKLTVLNFGSYT*PPYVSKGPALVTSMRPYL 288761 Query: 162 -QRDVDFLIIYIEEAHPSDGWVTTDSPYI-IPQHRSLEDRVS-AARVLQQGAPGCA---- 214 + ++YI EAHP GW + I Q ++L R++ AA+ + A CA Sbjct: 288762 DAGSLSLFLVYIREAHPEGGWAIPAADGICYRQPKTLASRLAVAAKFAEHQAEWCAGVPM 288941 Query: 215 LVLDTMANSSSSAYGAYFERLYVI-QSGTIMYQGGRGPDGYQVSELRTWLE 264 LV D N+ AY A ERL V+ + +++ G+GP Y V +L +++ Sbjct: 288942 LVDDPTTNALDIAYEAPPERLVVLDEQLNVVFFSGQGPFQYSVPKLAAFVK 289094 >scaffold_1614 Length = 7841 Score = 54.7 bits (130), Expect = 4e-07 Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 2/156 (1%) Frame = +2 Query: 125 ILDYAQGNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTT 184 +LD P L S T PPF A ++L + V F ++Y EAH SD W Sbjct: 545 LLDSLPAAGPTFLLAASFT*PPFRAHAQLLEQLRVRADGVVRFQLVYTAEAHASDEW-PV 721 Query: 185 DSPYIIPQHRSLEDRVSAA--RVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGT 242 S Q RS +RVS A R+ + G ++DT + A+ + R Y + T Sbjct: 722 GSHIAQRQPRSTHERVSVARRRLAELGVNWPGTLVDTGREAFQEAFACWPLRWYFLDGHT 901 Query: 243 IMYQGGRGPDGYQVSELRTWLERYDEQLHGARPRRV 278 + + Y V+++ W+ E+ A R V Sbjct: 902 VTHIAQPSGGAYDVTQIELWINLQLERATNA*SRCV 1009 >scaffold_405 Length = 74758 Score = 54.7 bits (130), Expect = 4e-07 Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 2/156 (1%) Frame = +2 Query: 125 ILDYAQGNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTT 184 +LD P L S T PPF A ++L + V F ++Y EAH SD W Sbjct: 52178 LLDSLPAAGPTFLLAASFT*PPFRAHAQLLEQLRVRADGVVRFQLVYTAEAHASDEW-PV 52354 Query: 185 DSPYIIPQHRSLEDRVSAA--RVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGT 242 S Q RS +RVS A R+ + G ++DT + A+ + R Y + T Sbjct: 52355 GSHIAQRQPRSTHERVSVARRRLAELGVNWPGTLVDTGREAFQEAFACWPLRWYFLDGHT 52534 Query: 243 IMYQGGRGPDGYQVSELRTWLERYDEQLHGARPRRV 278 + + Y V+++ W+ E+ A R V Sbjct: 52535 VTHIAQPSGGAYDVTQIELWINLQLERATNA*SRCV 52642 >scaffold_1 Length = 3018814 Score = 47.8 bits (112), Expect = 4e-05 Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 14/134 (10%) Frame = +1 Query: 131 GNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSD----GWVTTDS 186 G+ +VL+F T P AR FQ L + V L +YI EA P D G + S Sbjct: 907270 GSDKVVLSFVGITCP--FARAYCFQDLYLAKNKAVPTLNVYIREAEPCDVFDAGGMHCTS 907443 Query: 187 PYIIPQ----HRSLEDRVSAARVLQ------QGAPGCALVLDTMANSSSSAYGAYFERLY 236 P + H+S ++R AR + +G CA+ +D+M ++ +AY A R Y Sbjct: 907444 PVACRRRVYWHKSADERALVARETKKYFEEWEGEGRCAMWMDSMDDALEAAYEARPWRQY 907623 Query: 237 VIQSGTIMYQGGRG 250 VI++ T G G Sbjct: 907624 VIEASTGKITGKLG 907665 >scaffold_494 Length = 46337 Score = 42.7 bits (99), Expect = 0.001 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 11/144 (7%) Frame = +3 Query: 131 GNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDS---- 186 G P +L GS T PP + L ++ ++YI EAH +D W S Sbjct: 11829 GPAPTLLVAGSFT*PPLRGLAPSLASLSREFAGRARVQLVYIAEAHAADEWPINSSRCAG 12008 Query: 187 -------PYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQ 239 P + + R++ +R+ AA P L++D + ++ A A+ RLY ++ Sbjct: 12009 PANSVLRPTSLAERRAVAERMLAALPCLAPLP---LLVDGLDDALLRALAAWPIRLYGVR 12179 Query: 240 SGTIMYQGGRGPDGYQVSELRTWL 263 G + G +++ R WL Sbjct: 12180 GGVLERIGRPHNACFELQPFRDWL 12251 >scaffold_7 Length = 1460757 Score = 42.7 bits (99), Expect = 0.001 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 11/144 (7%) Frame = +2 Query: 131 GNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDS---- 186 G P +L GS T PP + L ++ ++YI EAH +D W S Sbjct: 270416 GPAPTLLVAGSFT*PPLRGLAPSLASLSREFAGRARVQLVYIAEAHAADEWPINSSRCAG 270595 Query: 187 -------PYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQ 239 P + + R++ +R+ AA P L++D + ++ A A+ RLY ++ Sbjct: 270596 PANSVLRPTSLAERRAVAERMLAALPCLAPLP---LLVDGLDDALLRALAAWPIRLYGVR 270766 Query: 240 SGTIMYQGGRGPDGYQVSELRTWL 263 G + G +++ R WL Sbjct: 270767 GGVLERIGRPHNACFELQPFRDWL 270838 >scaffold_74 Length = 565035 Score = 35.8 bits (81), Expect = 0.17 Identities = 20/48 (41%), Positives = 26/48 (54%) Frame = +1 Query: 106 GGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCTXPPFMARMSA 153 GGPAP+ DG S +L RP +L+FGS T PPF+ + A Sbjct: 430420 GGPAPDGACHRLDGSAST-LLAELHAERPTILSFGSAT*PPFVLTIPA 430560 Score = 32.7 bits (73), Expect = 1.4 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Frame = +3 Query: 166 DFLIIYIEEAHPSDGWVTTDSP---YIIPQHRSLEDRVSAARVL--QQGAPGCALVLDTM 220 D ++Y EAHPSDGW +P RS +RV A L G L++D + Sbjct: 430716 DLRLVYCTEAHPSDGWAPHYAPPGFEATRYARSAAERVGTAVALAAAHGIDAALLLVDGI 430895 Query: 221 ANSSSSAYGA 230 + Y A Sbjct: 430896 GDELERRYEA 430925 >scaffold_386 Length = 81363 Score = 35.0 bits (79), Expect = 0.29 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 19/148 (12%) Frame = -2 Query: 135 LVLNFGSCTXPPFMARMSA-FQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYI---- 189 + L+F S + P + A R+ + V L +Y+ EAHP D + + + Sbjct: 72884 VALSFDSLSCPVWRGFAGAELHRIARSF--GVPVLHVYMAEAHPDDAFPSPMQGPVALAS 72711 Query: 190 -IPQHRSLEDRVSAARVLQQ------GAPGCALVLDTMANSSSSAYGAYFERLYVI---- 238 + +HR LE+R +AA Q G P LV D M ++ AY A R++++ Sbjct: 72710 ELRRHRDLEERKAAAGRAQAFLTHKVGRP-VVLVADGMGDALEEAYEARPFRMFILDVSR 72534 Query: 239 -QSGTIMYQGGRGP--DGYQVSELRTWL 263 + + ++ G P G + +ELR +L Sbjct: 72533 PDACVVAHKTGLAPFNMGAKFAELRAFL 72450 >scaffold_120 Length = 398279 Score = 34.3 bits (77), Expect = 0.50 Identities = 29/99 (29%), Positives = 42/99 (42%) Frame = -2 Query: 34 WLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWH 93 W+LD + H +GR R + E + S P D +C + +L AV Sbjct: 80899 WVLDTHESQGHLIGRERDYRVETAI-CPSGNYSSPIDRLVVCTVE------AGTLIAVGT 80741 Query: 94 GQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGN 132 GQ LD + G VV+P +Q+ +DYA GN Sbjct: 80740 GQSLDC-----KNGEVGKGRVVMPKTTANQYYIDYAPGN 80639 >scaffold_36 Length = 846907 Score = 34.3 bits (77), Expect = 0.50 Identities = 29/99 (29%), Positives = 42/99 (42%) Frame = +3 Query: 34 WLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWH 93 W+LD + H +GR R + E + S P D +C + +L AV Sbjct: 109752 WVLDTHESQGHLIGRERDYRVETAI-CPSGNYSSPIDRLVVCTVE------AGTLIAVGT 109910 Query: 94 GQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGN 132 GQ LD + G VV+P +Q+ +DYA GN Sbjct: 109911 GQSLDC-----KNGEVGKGRVVMPKTTANQYYIDYAPGN 110012 Score = 34.3 bits (77), Expect = 0.50 Identities = 29/99 (29%), Positives = 42/99 (42%) Frame = +2 Query: 34 WLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWH 93 W+LD + H +GR R + E + S P D +C + +L AV Sbjct: 111815 WVLDTHESQGHLIGRERDYRVETAI-CPSGNYSSPIDRLVVCTVE------AGTLIAVGT 111973 Query: 94 GQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGN 132 GQ LD + G VV+P +Q+ +DYA GN Sbjct: 111974 GQSLDC-----KNGEVGKGRVVMPKTTANQYYIDYAPGN 112075 Score = 32.7 bits (73), Expect = 1.4 Identities = 25/74 (33%), Positives = 36/74 (48%) Frame = +1 Query: 175 AHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFER 234 A PS G +T +P ++P R L R S R L+ +PG LVL +A G + Sbjct: 722542 ARPSRGR-STSAPLVLPLPRRLPCRDSPRRHLRDTSPGAKLVLPL---HYLAACGYSNDT 722709 Query: 235 LYVIQSGTIMYQGG 248 L V +++QGG Sbjct: 722710 LVVFTDHDVLFQGG 722751 >scaffold_176 Length = 293447 Score = 32.7 bits (73), Expect = 1.4 Identities = 25/74 (33%), Positives = 36/74 (48%) Frame = -3 Query: 175 AHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFER 234 A PS G +T +P ++P R L R S R L+ +PG LVL +A G + Sbjct: 92835 ARPSRGR-STSAPLVLPLPRRLPCRDSPRRHLRDTSPGAKLVLPL---HYLAACGYSNDT 92668 Query: 235 LYVIQSGTIMYQGG 248 L V +++QGG Sbjct: 92667 LVVFTDHDVLFQGG 92626 >scaffold_172 Length = 281237 Score = 31.2 bits (69), Expect = 4.2 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -3 Query: 40 CIRKHFLGRRRRGQPEPE--VELNSEGEEVPPDDPPICVSDDNR 81 C+R H GR G P P + + G+ PP PP +SDD+R Sbjct: 148227 CMRSH--GRAAVGAPPPASAAGIAAGGKGEPPPPPPYTISDDDR 148102 >scaffold_40 Length = 772994 Score = 31.2 bits (69), Expect = 4.2 Identities = 16/55 (29%), Positives = 25/55 (45%) Frame = +1 Query: 54 PEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGP 108 P P V ++S GE PP P+CV+ +++ G + FF Q + P Sbjct: 433438 PTPSVSVSSFGEHAPPSLCPVCVAGHYERTYFSTVLTFMAGARRVFFCQVEKVPP 433602 >scaffold_10 Length = 1299416 Score = 30.8 bits (68), Expect = 5.5 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -2 Query: 41 IRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNR 81 +R H + R R P + + + G+ PP PP +SDD+R Sbjct: 1292380 MRSHAVPRWARQLPRGGIGIAAGGKGEPPPPPPYTISDDDR 1292258 >scaffold_179 Length = 268887 Score = 30.4 bits (67), Expect = 7.2 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Frame = +1 Query: 55 EPEVELNSEGEEVPPDDPPICVSDDNRL--CTLASLKAVWHGQKLDFFKQAHEGGPAP 110 EPE E+ ++ EE P + PP C + C++ S K G + + E P P Sbjct: 13597 EPEEEVEAQEEEEPQEKPPCCTPPSISIPKCSMPSCKCFSKGGEEPPAEALAESAPGP 13770 >scaffold_159 Length = 306815 Score = 30.4 bits (67), Expect = 7.2 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Frame = +2 Query: 55 EPEVELNSEGEEVPPDDPPICVSDDNRL--CTLASLKAVWHGQKLDFFKQAHEGGPAP 110 EPE E+ ++ EE P + PP C + C++ S K G + + E P P Sbjct: 295379 EPEEEVEAQEEEEPQEKPPCCTPPSISIPKCSMPSCKCFSKGGEEPPAEALAESAPGP 295552 >scaffold_84 Length = 560683 Score = 30.4 bits (67), Expect = 7.2 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%) Frame = -2 Query: 46 LGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAH- 104 L ++ G P + E ++E + PP P + N T VW G + + H Sbjct: 514992 LSQQYNGDPRQQRERSTEAKAKPPTAAPYLLQVSNARVT------VWLGWQQSRYLALHR 514831 Query: 105 --EGGPAPNSEVVLP 117 E PAP S VLP Sbjct: 514830 ENESRPAPKSGEVLP 514786 >scaffold_455 Length = 74222 Score = 30.0 bits (66), Expect = 9.4 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 47 GRRRRGQPEPEVELNSEGEEVPPDDPP 73 GRR+R + +P E + +E PP DPP Sbjct: 16469 GRRQRNRAQPGREEEPQAQERPPPDPP 16549 >scaffold_71 Length = 610753 Score = 30.0 bits (66), Expect = 9.4 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Frame = -1 Query: 49 RRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAV---WH 93 RRR + P + P PP+C RL L SL+A WH Sbjct: 282781 RRRQRAAPAGAIRPGAVSFVPSGPPVCAGRGRRLLLLRSLRAAHLCWH 282638 >scaffold_56 Length = 655268 Score = 30.0 bits (66), Expect = 9.4 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +2 Query: 67 VPPDDPPICVSDDN--RLCTLASLKAVWHGQKLDFFKQAHEGGPAP 110 +PP PP C S + R T A L A WH + D +++ P P Sbjct: 442370 LPPSAPPSCPSRPHHARPATAARLDAHWHPPQTDLPRRSPPSAPRP 442507 >scaffold_23 Length = 1067758 Score = 30.0 bits (66), Expect = 9.4 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = -2 Query: 48 RRRRGQPEPEVELNSEGEEVPPDDP 72 RRR G E E E EGEE PP+ P Sbjct: 973047 RRRGGGGEEEEEEEEEGEEAPPNGP 972973 >scaffold_11 Length = 1256784 Score = 30.0 bits (66), Expect = 9.4 Identities = 43/170 (25%), Positives = 62/170 (36%), Gaps = 5/170 (2%) Frame = -1 Query: 48 RRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGG 107 RRRRG+ +L ++ VP P C R + + W + Sbjct: 628470 RRRRGRARRRGKLVADARGVPHRVGPCCAVAAAR---GSRSR*AWRCR----------AA 628330 Query: 108 PAPNSEVVLPDGFQSQHILDYAQGNRPL-----VLNFGSCTXPPFMARMSAFQRLVTKYQ 162 PA + V P G + +H LD ++G RPL + S T PP R SA +R ++ Sbjct: 628329 PAGDGREVGPSGARLRHFLDTSEG-RPLSPSGCSPSSSSLTWPPPRRRSSAPERSAPRHS 628153 Query: 163 RDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPG 212 P+ W+ P H S R S A L +PG Sbjct: 628152 SPP-----ARRRRRPTRCWLPP------PPHSSRPSRRSCASPLAAPSPG 628036 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 167,727,055 Number of sequences in database: 7809 Lambda K H 0.322 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,799,531 Number of Sequences: 7809 Number of extensions: 3080171 Number of successful extensions: 12964 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1497 Number of HSP's successfully gapped in prelim test: 294 Number of HSP's that attempted gapping in prelim test: 4247 Number of HSP's gapped (non-prelim): 10759 length of query: 278 length of database: 55,909,018 effective HSP length: 110 effective length of query: 168 effective length of database: 55,050,028 effective search space: 9248404704 effective search space used: 9248404704 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 66 (30.0 bits)