TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: genome.fa 
           35 sequences; 31,379,198 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo...    29   3.0  
ref|NC_009309.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo...    29   3.9  
ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo...    28   6.7  
ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75/M2904 chromo...    28   8.8  

>ref|NC_009302.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 10
          Length = 612479

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 36    HVVLLLSRSKSTRGEWRRMLTSEGL 60
             HV +LL+R     GEWR +L  EGL
Sbjct: 51238 HVRVLLARHHHRPGEWRHVLAHEGL 51164


>ref|NC_009309.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 17
          Length = 694732

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 110   ATCHLLDFASPERPLVVNFGSATXPPFTSQ--LPAFRKL 146
             A  +L+D A+ ERP   +  S   PPFTS   LPA R +
Sbjct: 78001 AQLYLVDLAAAERPQRSSLKSQLLPPFTSSSTLPADRAI 77885


>ref|NC_009327.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 35
          Length = 2686796

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
 Frame = +2

Query: 119    SPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSL 178
              +P +  V + G+ +     S L  F+ ++ E    A  L+ Y+D +HP   W        
Sbjct: 809012 APIKSCVDHQGAMSTSIVISGLVVFQDVLTEEEETA--LIYYLDNSHPFPPWKESQSGRR 809185

Query: 179    SFEVKKHQN-QEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVA 226
                +    +N ++ +   A+      +L P C  ++   +N    AY +A
Sbjct: 809186 KQDYGPKRNFKKKKVRPAEIPAMPLALEPVCATISSTTENFTGRAYRIA 809332


>ref|NC_009323.1| Leishmania braziliensis MHOM/BR/75/M2904 chromosome 31
          Length = 1602271

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 68      LLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFAS--PERPLV 125
               LLD +KQ++       +  V  SS+  G ++GNG+  +  +G +    D  S    R  V
Sbjct: 1435800 LLDEWKQLQCHFKPSATGAVISSSSPSGSSTGNGSTSRAGKGDSSSGTDVVSCGTIRSSV 1435621

Query: 126     VNFGSA 131
               V+F  A
Sbjct: 1435620 VSFDVA 1435603


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 31,379,198
  Number of sequences in database:  35
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,820,764
Number of Sequences: 35
Number of extensions: 233358
Number of successful extensions: 1184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 107
length of query: 265
length of database: 10,459,732
effective HSP length: 98
effective length of query: 167
effective length of database: 10,456,302
effective search space: 1746202434
effective search space used: 1746202434
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)