TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Homo sapiens # Complete (265 letters) Database: genome.fa 7809 sequences; 167,727,055 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_253 67 8e-11 scaffold_164 67 8e-11 scaffold_494 45 3e-04 scaffold_7 45 3e-04 scaffold_1614 40 0.011 scaffold_405 40 0.011 scaffold_74 37 0.054 scaffold_386 37 0.071 scaffold_183 35 0.35 scaffold_3936 33 1.3 scaffold_32 33 1.3 scaffold_161 32 3.0 scaffold_91 32 3.0 >scaffold_253 Length = 194081 Score = 66.6 bits (161), Expect = 8e-11 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 15/152 (9%) Frame = -1 Query: 118 ASPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADF--LLVYIDEAHPSDGWAIPG- 174 + P + V+NFGS T PP+ S+ PA + + LVYI EAHP GWAIP Sbjct: 9662 SGPRKLTVLNFGSYT*PPYVSKGPALVTSMRPYLDAGSLSLFLVYIREAHPEGGWAIPAA 9483 Query: 175 -----------DSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAY 223 S L+ K ++Q + CA L++ D N +IAY Sbjct: 9482 DGICYRQPKTLASRLAVAAKFAEHQAEWCAGVPMLVD------------DPTTNALDIAY 9339 Query: 224 GVAFERVCIVQRQ-KIAYLGGKGPFSYNLQEV 254 ER+ ++ Q + + G+GPF Y++ ++ Sbjct: 9338 EAPPERLVVLDEQLNVVFFSGQGPFQYSVPKL 9243 >scaffold_164 Length = 300493 Score = 66.6 bits (161), Expect = 8e-11 Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 15/152 (9%) Frame = +3 Query: 118 ASPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADF--LLVYIDEAHPSDGWAIPG- 174 + P + V+NFGS T PP+ S+ PA + + LVYI EAHP GWAIP Sbjct: 288660 SGPRKLTVLNFGSYT*PPYVSKGPALVTSMRPYLDAGSLSLFLVYIREAHPEGGWAIPAA 288839 Query: 175 -----------DSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAY 223 S L+ K ++Q + CA L++ D N +IAY Sbjct: 288840 DGICYRQPKTLASRLAVAAKFAEHQAEWCAGVPMLVD------------DPTTNALDIAY 288983 Query: 224 GVAFERVCIVQRQ-KIAYLGGKGPFSYNLQEV 254 ER+ ++ Q + + G+GPF Y++ ++ Sbjct: 288984 EAPPERLVVLDEQLNVVFFSGQGPFQYSVPKL 289079 >scaffold_494 Length = 46337 Score = 45.1 bits (105), Expect = 3e-04 Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 2/160 (1%) Frame = +3 Query: 101 GTQEKIAEGATCHLLDFASPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVY 160 G A A L + P ++ GS T PP P+ L EF+ A LVY Sbjct: 11772 GAAAAAAAAAAVGLRAACAGPAPTLLVAGSFT*PPLRGLAPSLASLSREFAGRARVQLVY 11951 Query: 161 IDEAHPSDGWAIPGD--SSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNN 218 I EAH +D W I + + V + + +R A A+++L ++ D +D+ Sbjct: 11952 IAEAHAADEWPINSSRCAGPANSVLRPTSLAERRAVAERMLAALPCLAPLPLLVDGLDDA 12131 Query: 219 ANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWL 258 A R+ V+ + +G + LQ R WL Sbjct: 12132 LLRALAAWPIRLYGVRGGVLERIGRPHNACFELQPFRDWL 12251 >scaffold_7 Length = 1460757 Score = 44.7 bits (104), Expect = 3e-04 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 2/138 (1%) Frame = +2 Query: 123 PLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGD--SSLSF 180 P ++ GS T PP P+ L EF+ A LVYI EAH +D W I + + Sbjct: 270425 PTLLVAGSFT*PPLRGLAPSLASLSREFAGRARVQLVYIAEAHAADEWPINSSRCAGPAN 270604 Query: 181 EVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAY 240 V + + +R A A+++L ++ D +D+ A R+ V+ + Sbjct: 270605 SVLRPTSLAERRAVAERMLAALPCLAPLPLLVDGLDDALLRALAAWPIRLYGVRGGVLER 270784 Query: 241 LGGKGPFSYNLQEVRHWL 258 +G + LQ R WL Sbjct: 270785 IGRPHNACFELQPFRDWL 270838 >scaffold_1614 Length = 7841 Score = 39.7 bits (91), Expect = 0.011 Identities = 22/68 (32%), Positives = 30/68 (44%) Frame = +2 Query: 105 KIAEGATCHLLDFASPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEA 164 ++++G LLD P + S T PPF + +L V F LVY EA Sbjct: 518 RLSDGGAVSLLDSLPAAGPTFLLAASFT*PPFRAHAQLLEQLRVRADGVVRFQLVYTAEA 697 Query: 165 HPSDGWAI 172 H SD W + Sbjct: 698 HASDEWPV 721 >scaffold_405 Length = 74758 Score = 39.7 bits (91), Expect = 0.011 Identities = 22/68 (32%), Positives = 30/68 (44%) Frame = +2 Query: 105 KIAEGATCHLLDFASPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEA 164 ++++G LLD P + S T PPF + +L V F LVY EA Sbjct: 52151 RLSDGGAVSLLDSLPAAGPTFLLAASFT*PPFRAHAQLLEQLRVRADGVVRFQLVYTAEA 52330 Query: 165 HPSDGWAI 172 H SD W + Sbjct: 52331 HASDEWPV 52354 >scaffold_74 Length = 565035 Score = 37.4 bits (85), Expect = 0.054 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 9/115 (7%) Frame = +1 Query: 43 RSKSTRGEWRR---------MLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSVVHVSSTE 93 R +++ GEW R T+EGL+ + + A + +G AP+ + + Sbjct: 430297 RGRTSPGEWARDSMAQHSSHPTTAEGLKYQLQPYFRSA---LAVGGPAPDGACHRL---- 430455 Query: 94 GGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATXPPFTSQLPAFRKLVE 148 +G+ LL ERP +++FGSAT PPF +PA + E Sbjct: 430456 --------------DGSASTLLAELHAERPTILSFGSAT*PPFVLTIPAVAAIAE 430578 Score = 34.7 bits (78), Expect = 0.35 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +3 Query: 152 SVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKH 185 + AD LVY EAHPSDGWA P + FE ++ Sbjct: 430707 ATADLRLVYCTEAHPSDGWA-PHYAPPGFEATRY 430805 >scaffold_386 Length = 81363 Score = 37.0 bits (84), Expect = 0.071 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 9/101 (8%) Frame = -2 Query: 157 LLVYIDEAHPSDGWAIP--GDSSLSFEVKKHQNQEDRCAAA--QQLLERFSLPPQCRVVA 212 L VY+ EAHP D + P G +L+ E+++H++ E+R AAA Q + +VA Sbjct: 72788 LHVYMAEAHPDDAFPSPMQGPVALASELRRHRDLEERKAAAGRAQAFLTHKVGRPVVLVA 72609 Query: 213 DRMDNNANIAYGVAFERVCIVQRQK-----IAYLGGKGPFS 248 D M + AY R+ I+ + +A+ G PF+ Sbjct: 72608 DGMGDALEEAYEARPFRMFILDVSRPDACVVAHKTGLAPFN 72486 >scaffold_183 Length = 292547 Score = 34.7 bits (78), Expect = 0.35 Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 21/176 (11%) Frame = -2 Query: 84 SSVVHVSSTEGGDNSGNGTQEKIAEGATC--------------------HLLDFASPERP 123 ++ VH S E +G+ +++ A A C HL SPE Sbjct: 161563 ATCVHASGCEETPFTGSRGRDQCAASAVCCAISRLSLAHPSPIPRLSLGHLSAIFSPEEG 161384 Query: 124 LVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYID-EAHPSDGWAIPGDSSLSFEV 182 V+ G P +P R+ E +L D EA + G +V Sbjct: 161383 RVLGRGVGREP-----VPDHRREEGEGEQRDVGVLRAPDREAEHDEDRGDGGRGEHPAQV 161219 Query: 183 KKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKI 238 + +DR AA + ++ LPP C VVA R ++ G A ERV ++RQ + Sbjct: 161218 AAEEQVDDRLVAAVLVDDQRVLPPVCEVVAPRHEHQKGEEDGGAAERVDHLRRQHL 161051 >scaffold_3936 Length = 1828 Score = 32.7 bits (73), Expect = 1.3 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -3 Query: 42 SRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSV 86 +RS+ R RR T R W SFLL A K ++L AP++S+ Sbjct: 1223 ARSRVARSSSRRTSTVSSERLAWLSFLLHAEKLLRLTPCAPHASL 1089 >scaffold_32 Length = 939480 Score = 32.7 bits (73), Expect = 1.3 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = +1 Query: 42 SRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSV 86 +RS+ R RR T R W SFLL A K ++L AP++S+ Sbjct: 434860 ARSRVARSSSRRTSTVSSERLAWLSFLLHAEKLLRLTPCAPHASL 434994 >scaffold_161 Length = 301990 Score = 31.6 bits (70), Expect = 3.0 Identities = 23/94 (24%), Positives = 40/94 (42%) Frame = +1 Query: 27 LYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSV 86 L +S + + ++L+R + +GE R E RCV+K++ K+ G+D +S Sbjct: 108691 LRNSTSPFRGLQVVLTRDEKRKGEKR-----ESTRCVYKAYKKRRKKRRDTGDDETETS- 108852 Query: 87 VHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASP 120 + +G Q A GA D+ P Sbjct: 108853 --AGQSRADPGTGESEQTASAAGAAATSTDYGGP 108948 >scaffold_91 Length = 501964 Score = 31.6 bits (70), Expect = 3.0 Identities = 23/94 (24%), Positives = 40/94 (42%) Frame = +1 Query: 27 LYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSV 86 L +S + + ++L+R + +GE R E RCV+K++ K+ G+D +S Sbjct: 183895 LRNSTSPFRGLQVVLTRDEKRKGEKR-----ESTRCVYKAYKKRRKKRRDTGDDETETS- 184056 Query: 87 VHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASP 120 + +G Q A GA D+ P Sbjct: 184057 --AGQSRADPGTGESEQTASAAGAAATSTDYGGP 184152 Score = 30.0 bits (66), Expect = 8.7 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 11/105 (10%) Frame = +2 Query: 41 LSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSVVHV---SSTEGGDN 97 +SR+ + R EWRRM G R + + + P+S+ V V S G + Sbjct: 433523 VSRAAAARAEWRRMEVVVGGRVAREEVSRGGLGPAQSARE-PSSAPVGVGYEESAHGREG 433699 Query: 98 SGNGTQEKIAEGATCHLLDFASP-----ERPLV---VNFGSATXP 134 G G + ++ E LLD +P ERPL V+ S T P Sbjct: 433700 CGRGRRGRLDE-----LLDLGNPVFWRGERPLA*RRVSDASGTCP 433819 Database: genome.fa Posted date: Jan 16, 2009 12:51 PM Number of letters in database: 167,727,055 Number of sequences in database: 7809 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,417,594 Number of Sequences: 7809 Number of extensions: 1184419 Number of successful extensions: 5712 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 709 Number of HSP's successfully gapped in prelim test: 181 Number of HSP's that attempted gapping in prelim test: 2973 Number of HSP's gapped (non-prelim): 4043 length of query: 265 length of database: 55,909,018 effective HSP length: 109 effective length of query: 156 effective length of database: 55,057,837 effective search space: 8589022572 effective search space used: 8589022572 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 66 (30.0 bits)