TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: genome.fa 
           23,491 sequences; 86,045,674 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXJ01000256.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    30   3.9  
gb|AAXJ01000448.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   6.6  
gb|AAXJ01000318.1| Perkinsus marinus ATCC 50983 strain ATCC 5098...    29   6.6  

>gb|AAXJ01000256.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296734694,
             whole genome shotgun sequence
          Length = 40653

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 85    TTELGGLAPNCPVVRLSGQRCNIWEFMQGNRPLVLNFGSCTXPS 128
             +T  GGL P+CPV+R+  Q    ++     R +V N G+ + P+
Sbjct: 18229 STSCGGLNPSCPVLRIFSQCIVAFDLHGMLRDVVANNGTPSDPT 18098


>gb|AAXJ01000448.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296756580,
             whole genome shotgun sequence
          Length = 29019

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 64    TFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCN 106
             T F+     F+  V  +  E+  EL    P+ P+V LSG RC+
Sbjct: 18135 TMFAANMLNFLTHVHSKGPEEVQELFTAGPSRPIVLLSGSRCS 18007


>gb|AAXJ01000318.1| Perkinsus marinus ATCC 50983 strain ATCC 50983 gcontig_1104296762408,
            whole genome shotgun sequence
          Length = 35466

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 66   FSTQYFWFVLKVRWQRLEDTT 86
            ++ Q+FW+ L +RW R  DTT
Sbjct: 6840 WNAQWFWWYLSLRWLRTADTT 6778


  Database: genome.fa
    Posted date:  Jan 16, 2009 12:51 PM
  Number of letters in database: 86,045,674
  Number of sequences in database:  23,491
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,240,660
Number of Sequences: 23491
Number of extensions: 368932
Number of successful extensions: 1830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of query: 249
length of database: 28,681,891
effective HSP length: 104
effective length of query: 145
effective length of database: 26,238,827
effective search space: 3804629915
effective search space used: 3804629915
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)