TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: genome.fa 
           9 sequences; 8,347,606 total letters

Searching.........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ct...    25   9.4  

>gb|AAGK01000006.1| Theileria parva strain Muguga chromosome 3 ctg_531, whole genome
             shotgun sequence
          Length = 570487

 Score = 25.0 bits (53), Expect = 9.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 19    EMLGRVEDAVRVTQNNDACVAETLAAARFLEHFILNGPDPTALESVIRQLRD 70
             E+L  V  AV    +ND+ +A+ L   R  +H     PD    ES +R L++
Sbjct: 43054 ELLLGVLQAVSEFDSNDSDIAKNLFIKRLRDHINSLNPDD---ESSVRSLKN 42908


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:27 PM
  Number of letters in database: 8,347,606
  Number of sequences in database:  9
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,346,638
Number of Sequences: 9
Number of extensions: 15608
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 3
length of query: 189
length of database: 2,782,535
effective HSP length: 85
effective length of query: 104
effective length of database: 2,781,770
effective search space: 289304080
effective search space used: 289304080
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)