TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: genome.fa 572 sequences; 14,903,514 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQX01000501.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 30 0.65 gb|AAQX01000216.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 29 0.85 gb|AAQX01000552.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 27 3.2 gb|AAQX01000325.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 27 5.5 gb|AAQX01000139.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 27 5.5 gb|AAQX01000277.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 26 7.2 gb|AAQX01000245.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 26 7.2 gb|AAQX01000197.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 26 7.2 gb|AAQX01000369.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 26 9.4 gb|AAQX01000279.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 26 9.4 gb|AAQX01000249.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 26 9.4 gb|AAQX01000112.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 26 9.4 gb|AAQX01000080.1| Phytophthora ramorum strain Pr102 Pramorum_Co... 26 9.4 >gb|AAQX01000501.1| Phytophthora ramorum strain Pr102 Pramorum_Cont501, whole genome shotgun sequence Length = 87202 Score = 29.6 bits (65), Expect = 0.65 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = -2 Query: 98 PQELIPAVFVNTUGLPG---AFQAALHGVLTATNYVQAVRDTMSCGGCTCS 145 P L A F+NT LPG ++ +HG ++ ++ SCG C CS Sbjct: 12936 PASLS*ANFINTKSLPGYAHMCESTVHGSAVSSVHMSLNCKHTSCGLCGCS 12784 >gb|AAQX01000216.1| Phytophthora ramorum strain Pr102 Pramorum_Cont216, whole genome shotgun sequence Length = 44740 Score = 29.3 bits (64), Expect = 0.85 Identities = 26/86 (30%), Positives = 43/86 (50%) Frame = -3 Query: 77 QDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUGLPGAFQAALHGVLTATNYVQAVRDT 136 + L A+ H VK+ S ++++ A + G+ G F+AA+ LTA+ YV A++ Sbjct: 4535 RSLKNAIRAAGHSVKDVTSA--EDILAAEVLIFPGV-GNFRAAME-FLTASGYVAALKAY 4368 Query: 137 MSCGGCTCSRGSFIGACLGAQVGLEG 162 ++ F+G CLG Q EG Sbjct: 4367 IAADR------RFLGICLGMQTLFEG 4308 >gb|AAQX01000552.1| Phytophthora ramorum strain Pr102 Pramorum_Cont552, whole genome shotgun sequence Length = 199956 Score = 27.3 bits (59), Expect = 3.2 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = -2 Query: 44 AARFLEHFILNGPDPTALESVIRQLRDPNRKQAQDLDQA-VVGHIHQVKENL 94 A+ F EHF G ++ V+R+LRD N A + + GH+ V E L Sbjct: 137609 ASAFHEHFAAQGGVELVVDGVVRRLRDLN--LAWQIGRLHARGHVDSVSEQL 137460 >gb|AAQX01000325.1| Phytophthora ramorum strain Pr102 Pramorum_Cont325, whole genome shotgun sequence Length = 240192 Score = 26.6 bits (57), Expect = 5.5 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = -2 Query: 138 SCGGCTCSRGSFIGACLGA 156 SCG CTCS S GA LG+ Sbjct: 215216 SCGICTCSSVSRSGASLGS 215160 >gb|AAQX01000139.1| Phytophthora ramorum strain Pr102 Pramorum_Cont139, whole genome shotgun sequence Length = 58346 Score = 26.6 bits (57), Expect = 5.5 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 57 DPTALESVIRQLRDPNRKQAQDLDQAVVGHIHQVK 91 DP + V QL N K+A+D+D+ + + Q K Sbjct: 26229 DPAEIRQVQEQLHQRNAKEAEDVDRVFLMNKEQEK 26125 >gb|AAQX01000277.1| Phytophthora ramorum strain Pr102 Pramorum_Cont277, whole genome shotgun sequence Length = 93828 Score = 26.2 bits (56), Expect = 7.2 Identities = 17/67 (25%), Positives = 26/67 (38%) Frame = +3 Query: 36 ACVAETLAAARFLEHFILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLS 95 A + ET+ + EH L+ +A V N + + VVGH + L Sbjct: 36306 AALVETIELVQQFEHRTLDFTSSSAARVVALATDSINFVDKNNRRRVVVGHAEHLTHELG 36485 Query: 96 KTPQELI 102 PQ L+ Sbjct: 36486 AVPQVLL 36506 >gb|AAQX01000245.1| Phytophthora ramorum strain Pr102 Pramorum_Cont245, whole genome shotgun sequence Length = 174567 Score = 26.2 bits (56), Expect = 7.2 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -2 Query: 139 CGGCTCSRGSFIGACLGAQVGL 160 CGGC+ SF +C G GL Sbjct: 116261 CGGCSGGSNSFARSCCGLVAGL 116196 >gb|AAQX01000197.1| Phytophthora ramorum strain Pr102 Pramorum_Cont197, whole genome shotgun sequence Length = 61560 Score = 26.2 bits (56), Expect = 7.2 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -2 Query: 131 QAVRDTMSCGGCTCSR 146 Q +RDT+SC C+CSR Sbjct: 49742 QRLRDTVSCC*CSCSR 49695 >gb|AAQX01000369.1| Phytophthora ramorum strain Pr102 Pramorum_Cont369, whole genome shotgun sequence Length = 100296 Score = 25.8 bits (55), Expect = 9.4 Identities = 18/67 (26%), Positives = 26/67 (38%) Frame = -3 Query: 119 ALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVL 178 AL T +N++ R+ + G C C R G VG I + T + V Sbjct: 51064 ALRSPQTPSNHMPRAREDYNRGNCRCGR-------QGGTVGS*RIQQEQAESTAAHRQVN 50906 Query: 179 EHAKKIT 185 EH + T Sbjct: 50905 EHIRANT 50885 >gb|AAQX01000279.1| Phytophthora ramorum strain Pr102 Pramorum_Cont279, whole genome shotgun sequence Length = 62633 Score = 25.8 bits (55), Expect = 9.4 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 124 LTATNYVQAVRDTMSCGGCTCSRGSFI 150 LTA N + T +CG C+C+RGS + Sbjct: 32744 LTAWNRCSS---TCTCGMCSCTRGSML 32673 >gb|AAQX01000249.1| Phytophthora ramorum strain Pr102 Pramorum_Cont249, whole genome shotgun sequence Length = 35083 Score = 25.8 bits (55), Expect = 9.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -1 Query: 30 VTQNNDACVAETLAAARFLEHFILNGPDPTALESVI 65 VT N ACV + A+ RF + + D ALE +I Sbjct: 28810 VTPNRTACVLSSQASLRFSRYAFYSCCDAHALERLI 28703 >gb|AAQX01000112.1| Phytophthora ramorum strain Pr102 Pramorum_Cont112, whole genome shotgun sequence Length = 222948 Score = 25.8 bits (55), Expect = 9.4 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +1 Query: 84 VGHIHQVKENLSKTPQELIPAVFVN 108 +GHI + LSK P ++ PAV ++ Sbjct: 111220 LGHIEAIVVKLSKQPSQIKPAVVIS 111294 >gb|AAQX01000080.1| Phytophthora ramorum strain Pr102 Pramorum_Cont80, whole genome shotgun sequence Length = 59987 Score = 25.8 bits (55), Expect = 9.4 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Frame = +2 Query: 116 FQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVG-----LEGIPASWSSR 170 F L G + A + + A ++ + TCS F+G+ GA++ +E + A +S Sbjct: 19481 FDVPLSGSIAALSSISASANSSTPASPTCSCSCFLGS-FGARISSNDPKIEAVAA--ASA 19651 Query: 171 TQRYESVLEHAK 182 T R V AK Sbjct: 19652 TNRTSGVFSDAK 19687 Database: genome.fa Posted date: Jan 19, 2010 5:07 PM Number of letters in database: 14,903,514 Number of sequences in database: 572 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,721,287 Number of Sequences: 572 Number of extensions: 63316 Number of successful extensions: 451 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 27 Number of HSP's that attempted gapping in prelim test: 320 Number of HSP's gapped (non-prelim): 222 length of query: 189 length of database: 4,967,838 effective HSP length: 89 effective length of query: 100 effective length of database: 4,916,930 effective search space: 491693000 effective search space used: 491693000 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)