TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: genome.fa 306 sequences; 11,192,215 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AACB02000007.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02... 28 1.5 gb|AACB02000049.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02... 27 3.2 gb|AACB02000020.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02... 27 3.2 gb|AACB02000002.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02... 27 3.2 gb|AACB02000028.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02... 26 7.2 gb|AACB02000003.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02... 26 7.2 gb|AACB02000023.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02... 25 9.4 gb|AACB02000011.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02... 25 9.4 >gb|AACB02000007.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_7, whole genome shotgun sequence Length = 283910 Score = 28.1 bits (61), Expect = 1.5 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Frame = +1 Query: 104 AVFVNTUGLPGAFQAALHGVLTATN-----YVQAVRDTMSCGGCTCSRGSFIGACLGAQV 158 AV V+ LPG + HGV+ + +V V +M C S+ + G+C + Sbjct: 150868 AVSVHASSLPGTMKTPRHGVIMSGTRILMFFVCPVSSSMDCKQLGSSKETMRGSC--QLI 151041 Query: 159 GLEG 162 GL G Sbjct: 151042 GLSG 151053 >gb|AACB02000049.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_49, whole genome shotgun sequence Length = 71699 Score = 26.9 bits (58), Expect = 3.2 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Frame = +2 Query: 57 DPTALESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUGLPGAF 116 DP+ALE+V + Q+++ D+ +HQ +E S+ + +F + L Sbjct: 15830 DPSALETVDTSKASSSSDQSEEEDETDSESVHQDQEQSSQENNDTTEELFYISRELSNKV 16009 Query: 117 Q--AALHGVLTATNYVQAVRDTMSCGGC-TCSR 146 + + + N R CG C CS+ Sbjct: 16010 ENLFTMKTAMFVLNIDLFTRTERGCGRCRQCSK 16108 >gb|AACB02000020.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_20, whole genome shotgun sequence Length = 187573 Score = 26.9 bits (58), Expect = 3.2 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -1 Query: 142 CTCSRGSFIGACLGAQVGLEGIPASWSSR 170 C+C+RGS G C +Q + SW R Sbjct: 35041 CSCTRGSSWGGCTISQTSVRADGRSWCLR 34955 >gb|AACB02000002.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_2, whole genome shotgun sequence Length = 647811 Score = 26.9 bits (58), Expect = 3.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +3 Query: 133 VRDTMSCGGCTCSRGSFIGAC 153 VR T +C G CSR S G+C Sbjct: 621384 VRGTFTCCGERCSRNSLAGSC 621446 >gb|AACB02000028.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_28, whole genome shotgun sequence Length = 143950 Score = 25.8 bits (55), Expect = 7.2 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = -3 Query: 113 PGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQ 172 PG+ A+ A+ ++ S GCT +R S CLG G +W +TQ Sbjct: 52025 PGSRAASASSSTEASLSTDTSTNS*SASGCTTTRTSRRLPCLG------GCFVAWPLQTQ 51864 Query: 173 RYE 175 R E Sbjct: 51863 RRE 51855 >gb|AACB02000003.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_3, whole genome shotgun sequence Length = 483138 Score = 25.8 bits (55), Expect = 7.2 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = -1 Query: 60 ALESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQEL-IPAVFVNTUGLPGAFQA 118 AL S++ L D + Q+V+ +H+V + +K PQE+ + A+ V+ GL F Sbjct: 368493 ALCSLLMGLDDEHVLSQSTTVQSVLTSVHRVAQLAAKGPQEVDLDAIQVSLLGLNHHFHV 368314 Query: 119 A 119 + Sbjct: 368313 S 368311 >gb|AACB02000023.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_23, whole genome shotgun sequence Length = 167475 Score = 25.4 bits (54), Expect = 9.4 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = -3 Query: 41 TLAAARFLEHFILNGPDPTALESVIRQLRDPNR 73 T A A EH P +LESV+ QL D R Sbjct: 31201 TEAEATLAEHLARLDASPDSLESVMEQLEDLER 31103 >gb|AACB02000011.1| Giardia lamblia ATCC 50803 strain WB C6 ctg02_11, whole genome shotgun sequence Length = 271033 Score = 25.4 bits (54), Expect = 9.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 142 CTCSRGSFIGACLGAQVGLEGIPASW 167 C+C+RGS G C +Q+ + SW Sbjct: 216089 CSCTRGSS*GGCTISQMSVRTDGRSW 216166 Database: genome.fa Posted date: Jan 19, 2010 5:05 PM Number of letters in database: 11,192,215 Number of sequences in database: 306 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,568,931 Number of Sequences: 306 Number of extensions: 40903 Number of successful extensions: 226 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 189 Number of HSP's gapped (non-prelim): 81 length of query: 189 length of database: 3,730,738 effective HSP length: 87 effective length of query: 102 effective length of database: 3,704,116 effective search space: 377819832 effective search space used: 377819832 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.4 bits)