TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelJ_tetraodon_nigroviridis 
         (189 letters)

Database: genome.fa 
           13 sequences; 8,173,701 total letters

Searching.............done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAXT01000005.1| Babesia bovis strain T2Bo chromosome 1 gconti...    27   1.9  
gb|AAXT01000002.1| Babesia bovis strain T2Bo chromosome 4 gconti...    27   2.4  
gb|AAXT01000001.1| Babesia bovis strain T2Bo chromosome 3 gconti...    26   5.4  

>gb|AAXT01000005.1| Babesia bovis strain T2Bo chromosome 1 gcontig_1104837696198, whole
              genome shotgun sequence
          Length = 821816

 Score = 27.3 bits (59), Expect = 1.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 121    HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGA 152
              HG  T   Y+Q V+    CG C C + +   A
Sbjct: 796562 HGEKTGCEYLQDVKHENKCGDCGCMKWNVTNA 796657



 Score = 25.4 bits (54), Expect = 7.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 120   LHGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEG 162
             +   L   + +Q V++ +   G  C R   +  CLG++ G  G
Sbjct: 67706 IQAALYPESALQIVKNIIRVAGYKCERDLLLDFCLGSKFGSRG 67578



 Score = 25.0 bits (53), Expect = 9.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 121    HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGA 152
              HG  T   Y+Q V+    C  C C + +   A
Sbjct: 672738 HGEKTGCEYLQDVKHENKCDACGCMKWNVTNA 672833



 Score = 25.0 bits (53), Expect = 9.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 121    HGVLTATNYVQAVRDTMSCGGCTCSR 146
              HG      Y+Q V+    CG C C +
Sbjct: 783774 HGTKPECTYLQDVKHENKCGDCGCMK 783851


>gb|AAXT01000002.1| Babesia bovis strain T2Bo chromosome 4 gcontig_1104837696308, whole
              genome shotgun sequence
          Length = 1797577

 Score = 26.9 bits (58), Expect = 2.4
 Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 2/131 (1%)
 Frame = -2

Query: 52     ILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHIHQVKENLSKTPQELIPAVFVNTUG 111
              +++G D    +  +R  + P    A D   +     H +K   SK P   +     N   
Sbjct: 680406 VISGSD----DKTVRVWKGPENADASDFKCS-----HVLKS--SKAPVVSMSLHPSNEYF 680260

Query: 112    LPGAFQAALHGV-LTATNYVQAVRDTMSCGGCTCSRGSFI-GACLGAQVGLEGIPASWSS 169
              L GA     H V L +   ++  RD  S     CS+  F     L A  G +G    W  
Sbjct: 680259 LAGASDGLWHLVDLESGQIIKICRDIPS----PCSKVQFHPDGLLAAGSGTDGAVHIWDI 680092

Query: 170    RTQRYESVLEH 180
              RTQ   S L+H
Sbjct: 680091 RTQSLASTLKH 680059



 Score = 26.2 bits (56), Expect = 4.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 127    TNYVQAVRDTMSCGGCTCSRGSFIGACL 154
              T ++   R +M+C    C    F G+CL
Sbjct: 368284 TQFIACFRSSMACSSVACLNCLFAGSCL 368367


>gb|AAXT01000001.1| Babesia bovis strain T2Bo chromosome 3 gcontig_1104837696278, whole genome
               shotgun sequence
          Length = 2593320

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -2

Query: 111     GLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSR 146
               G  G+     HG      Y+Q V+    CG C C +
Sbjct: 1682174 GCGGSSNNNQHGTKDGCTYLQDVKHENKCGTCGCMK 1682067



 Score = 25.4 bits (54), Expect = 7.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 121     HGVLTATNYVQAVRDTMSCGGCTCSRGSFIGACLG 155
               H VL+ T+Y +A    +SC   T SRG  I    G
Sbjct: 1951654 HNVLSTTSYPEATLSPISCSD-TFSRGCIIDVFSG 1951755



 Score = 25.0 bits (53), Expect = 9.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 121    HGVLTATNYVQAVRDTMSCGGCTCSR 146
              HG+ T   Y++ V++   C  C C +
Sbjct: 567723 HGIKTDCEYLKDVKENTPCKDCGCMK 567646



 Score = 25.0 bits (53), Expect = 9.2
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 121    HGVLTATNYVQAVRDTMSCGGCTCSR 146
              HG+ T   Y++ V++   C  C C +
Sbjct: 547439 HGIKTDCEYLKDVKENTPCKDCGCMK 547362


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:04 PM
  Number of letters in database: 8,173,701
  Number of sequences in database:  13
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,607,336
Number of Sequences: 13
Number of extensions: 21779
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 62
length of query: 189
length of database: 2,724,567
effective HSP length: 85
effective length of query: 104
effective length of database: 2,723,462
effective search space: 283240048
effective search space used: 283240048
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)