TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           32,746 sequences; 89,612,356 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAHK01001137.1| Trypanosoma cruzi strain CL Brener tcruzi_104...   211   1e-54
gb|AAHK01001168.1| Trypanosoma cruzi strain CL Brener tcruzi_104...   207   1e-53
gb|AAHK01028898.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    66   7e-11
gb|AAHK01000035.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    30   5.4  

>gb|AAHK01001137.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053503599, whole genome
             shotgun sequence
          Length = 16816

 Score =  211 bits (537), Expect = 1e-54
 Identities = 107/227 (47%), Positives = 154/227 (67%), Gaps = 4/227 (1%)
 Frame = +2

Query: 31    DNEATDYSSHRYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKA 90
             D E  D SS  +KYLEML+ +DL+QMLHEK E FHHL+SK+ELI A++ LEK+E+ ++K 
Sbjct: 15380 DTEGDDDSS--FKYLEMLEVSDLRQMLHEKKEPFHHLQSKQELIHAIITLEKKEKLVKKL 15553

Query: 91    R----VTDTVQHEVRVEYCSGUGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVV 146
             R     T    H +RVEYCSG GYRRHYEE+   + RSLPP   ++     P +KF+  V
Sbjct: 15554 RRQRDTTTNRPHVLRVEYCSG*GYRRHYEEMVHHISRSLPPNTNQE-----PILKFIPSV 15718

Query: 147   YSVGAFREFIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMV 206
             YSVG  RE IG+ LS  F+AS+ I   AP+  G  PP++  W+EQ+R M++ AGF+ N+ 
Sbjct: 15719 YSVGIVRETIGSFLSLLFIASLIIGIGAPYFAGVFPPNVVRWVEQNRTMIIAAGFVANLT 15898

Query: 207   ASSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHILRQIISGTA 253
               S+LQSGAFE++++ +LI+SKL+   + +A  LA+ +++ ++   A
Sbjct: 15899 GGSILQSGAFEMFMDDTLIFSKLQQNKMLSAVDLAEIVIQALVHAPA 16039


>gb|AAHK01001168.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053505163, whole genome
             shotgun sequence
          Length = 16253

 Score =  207 bits (527), Expect = 1e-53
 Identities = 108/223 (48%), Positives = 155/223 (69%), Gaps = 4/223 (1%)
 Frame = +3

Query: 31    DNEATDYSSHRYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKRE---EAL 87
             D E  D S   +KYLEML+ +DL+QMLHEK + FHHLRSK+ELI A++ LEK+E   E L
Sbjct: 10533 DTEGDDDSL--FKYLEMLEVSDLRQMLHEKKQPFHHLRSKQELIHAIITLEKKEKLVEKL 10706

Query: 88    RKARVTDTVQ-HEVRVEYCSGUGYRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVV 146
             R+ R T   + H +RVEYCSG GYRRHYEE+   + RSLPP      K ++P +KF+  V
Sbjct: 10707 RRRRDTKASRPHVLRVEYCSG*GYRRHYEEMVHHISRSLPPN-----KNQEPILKFLPSV 10871

Query: 147   YSVGAFREFIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMV 206
             YSVG  RE IG+ LS  F+AS+ I   AP+  G  PP++  W+EQ+R M++ AGF+ N++
Sbjct: 10872 YSVGIVRETIGSFLSLLFIASLIIGIGAPYFVGIFPPNVVTWVEQNRTMIIAAGFVANLI 11051

Query: 207   ASSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHILRQII 249
               S+LQSGAFE++++ +LI+SKL+   + +A  LA+ +++ ++
Sbjct: 11052 CGSILQSGAFEMFMDDTLIFSKLQQNKMLSAVDLAEIVIQALV 11180


>gb|AAHK01028898.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053441273, whole
           genome shotgun sequence
          Length = 707

 Score = 65.9 bits (159), Expect = 7e-11
 Identities = 33/55 (60%), Positives = 43/55 (78%)
 Frame = -2

Query: 31  DNEATDYSSHRYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREE 85
           D E  D S   +KYLEML+ +DL+QMLHEK + FHHLRSK+ELI A++ LEK+E+
Sbjct: 163 DTEGDDDSL--FKYLEMLEVSDLRQMLHEKKQPFHHLRSKQELIHAIITLEKKEK 5


>gb|AAHK01000035.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053509979, whole genome
             shotgun sequence
          Length = 93393

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -1

Query: 174   APFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFE 217
             +P  R  LP H   W+     ++ G+G ++ ++  + L+  +FE
Sbjct: 25134 SPSARSELPRHAKNWMSNEENIIFGSGDVITVIVHTKLRCISFE 25003


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:13 PM
  Number of letters in database: 89,612,356
  Number of sequences in database:  32,746
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,788,294
Number of Sequences: 32746
Number of extensions: 320217
Number of successful extensions: 1501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of query: 259
length of database: 29,870,785
effective HSP length: 104
effective length of query: 155
effective length of database: 26,465,201
effective search space: 4102106155
effective search space used: 4102106155
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)