TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelTryp; hypothetical protein [Trypanosoma brucei TREU927]
PARTIALLY FROM XP_844760.1
         (259 letters)

Database: genome.fa 
           5578 sequences; 78,051,097 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQY01000102.1| Phytophthora sojae strain P6497 Psojae_Cont10...    47   4e-05
gb|AAQY01000795.1| Phytophthora sojae strain P6497 Psojae_Cont79...    31   1.8  
gb|AAQY01000175.1| Phytophthora sojae strain P6497 Psojae_Cont17...    31   2.3  
gb|AAQY01000770.1| Phytophthora sojae strain P6497 Psojae_Cont77...    30   3.1  
gb|AAQY01002230.1| Phytophthora sojae strain P6497 Psojae_Cont22...    29   6.8  
gb|AAQY01001353.1| Phytophthora sojae strain P6497 Psojae_Cont13...    29   6.8  
gb|AAQY01001271.1| Phytophthora sojae strain P6497 Psojae_Cont12...    29   6.8  
gb|AAQY01000867.1| Phytophthora sojae strain P6497 Psojae_Cont86...    29   8.9  
gb|AAQY01000726.1| Phytophthora sojae strain P6497 Psojae_Cont72...    29   8.9  

>gb|AAQY01000102.1| Phytophthora sojae strain P6497 Psojae_Cont102, whole genome shotgun
              sequence
          Length = 152235

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 53/224 (23%), Positives = 86/224 (38%), Gaps = 69/224 (30%)
 Frame = -2

Query: 82     KREEALRKARVTDTVQHEVRVEYCSGUGYRRHYEEVAESLLRSLPPELREQQKGKK---- 137
              K +EA R  +  D     VRV YC+  GY+++++++ ++ L    P L ++  G      
Sbjct: 121826 KAQEAARHLQ-RDLADDHVRVMYCTSCGYQQNFQQI-KTYLEDTFPHLVDRVDGANYDVD 121653

Query: 138    PFIKFVGVV---YSVGA-------------FREFIGNILSTGFLASIA---ISFFAPFLR 178
              PF    G++   ++VG                +F+G   +T  +  +    +SF +P  R
Sbjct: 121652 PFKMVSGILITSWNVGKGAKRFMHCVALQMLAQFMGYAQATAMVLLVFGEYVSFLSPSFR 121473

Query: 179    G-------------------ALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFEVY 219
              G                    +      W   +R   V     M  +ASSL  SGAFE++
Sbjct: 121472 GFRGCLGLTRVCRA*ILPALGMNTTALRWALNNRIAAVFIVLFMGSIASSLTASGAFEIF 121293

Query: 220    LNGS---------------------------LIYSKLETGAVPT 236
               NG+                           LI+S+LETG  PT
Sbjct: 121292 FNGALGG*RQSCVGPCLC*LYLLRWLLGPHDLIFSELETGRWPT 121161


>gb|AAQY01000795.1| Phytophthora sojae strain P6497 Psojae_Cont795, whole genome shotgun
              sequence
          Length = 129939

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
 Frame = -3

Query: 49     KEADLKQMLHEKGEAFHHLRSKRELILA--VLKLEKREEALRKARVTDTVQHEVRVEYCS 106
              K   L    HE+ +A  H+RSK  + +   + +L +R   +  +R    + HE+  +   
Sbjct: 116791 KRVHLHDRRHEEHDAVDHIRSKVSIRMHCWISRLNERLGDVESSRQKR*MNHELPKD--- 116621

Query: 107    GUGYRRHYEEVAE-----SLLRSLPPELREQQKGKK 137
                   RH+   AE     +L+R LP  LR +Q+ K+
Sbjct: 116620 -----RHHHGQAEHSRRWTLVRELPGRLRSRQEQKE 116528


>gb|AAQY01000175.1| Phytophthora sojae strain P6497 Psojae_Cont175, whole genome shotgun
             sequence
          Length = 258307

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 148   SVGAFREFIGNILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVV 197
             SV +  E I  ++   FLA+  IS++ PF  G     + +W+ Q + + +
Sbjct: 47638 SVASLAESILALIGDTFLAAACISYYGPFTGGFRQRIVDQWVRQTQELAI 47787


>gb|AAQY01000770.1| Phytophthora sojae strain P6497 Psojae_Cont770, whole genome shotgun
             sequence
          Length = 81558

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 54    KQMLHEKGEAFHHLRSK--RELILAVLKLEKREEALRKARVTDTVQHEVRVEYCSGUGYR 111
             K +LH   E  H L     R +++  L+  +REE  ++  V  T+  + R +     G  
Sbjct: 42516 KDLLHLLSETEHRLSRHLLRGIVVRSLRRRRREEGGQQLLVPATLALQTRAQVHERRGVH 42695

Query: 112   RHYEEVAESLLRSL 125
             RH + + +  L +L
Sbjct: 42696 RHVQSLLQDQLHAL 42737


>gb|AAQY01002230.1| Phytophthora sojae strain P6497 Psojae_Cont2230, whole genome
           shotgun sequence
          Length = 10212

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 106 SGUGYRRHYEEVAESLLRSLPPELREQQ 133
           S  G +   E+VA  LLRSLP ELRE++
Sbjct: 112 SSIGAKMEDEDVAICLLRSLPKELRERR 29


>gb|AAQY01001353.1| Phytophthora sojae strain P6497 Psojae_Cont1353, whole genome shotgun
             sequence
          Length = 54019

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 58    HEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTVQHEVRV 102
             HE+ E   H+R   E +  V++LE+REEAL    V    + +VRV
Sbjct: 35145 HEEDEGADHMRPDVERL--VVQLEEREEALLGRVVQPVARADVRV 35273


>gb|AAQY01001271.1| Phytophthora sojae strain P6497 Psojae_Cont1271, whole genome shotgun
              sequence
          Length = 155834

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -3

Query: 173    FAPFLR--GALPPHIAEWIEQHRGMVVGAGFMMNMVASSLLQSGAFEVYLNGSLIYS 227
              FAP  R    +PPH+ +W+ + + ++V A    ++   S++      V+  GS+I+S
Sbjct: 154566 FAPS*RIGECIPPHVCQWVREMQSLIVKALLN*SLATRSIV------VFSYGSMIFS 154414


>gb|AAQY01000867.1| Phytophthora sojae strain P6497 Psojae_Cont867, whole genome shotgun
             sequence
          Length = 171365

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 28/98 (28%), Positives = 41/98 (41%)
 Frame = +2

Query: 37    YSSHRYKYLEMLKEADLKQMLHEKGEAFHHLRSKRELILAVLKLEKREEALRKARVTDTV 96
             +++H  +    + EAD   + H+ G A HH   K  L + VL  +K  E L    V    
Sbjct: 82448 HNAHVVRVQHAVTEADRLPLGHQLGRAVHHFFKK--LFVHVLFSKKFREILPNGEVQHLG 82621

Query: 97    QHEVRVEYCSGUGYRRHYEEVAESLLRSLPPELREQQK 134
              H + V   S    R H+      +L +L  E  E QK
Sbjct: 82622 HHLLLVLQVSA---RAHHTRELVLVLENL--ETSESQK 82720


>gb|AAQY01000726.1| Phytophthora sojae strain P6497 Psojae_Cont726, whole genome shotgun
             sequence
          Length = 67650

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 133   QKGKKPFIKFVGVVYSVGAFREFIGNILSTGFLASIAISFFAPFLRGALPPH 184
             Q+ K P I +  +  ++     +    L    LA +  S   PF R  LPPH
Sbjct: 51671 QRSKPPLINYATIFMAISGASIYFSAALYAALLAGL--SCHTPFARAHLPPH 51820


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:09 PM
  Number of letters in database: 78,051,097
  Number of sequences in database:  5578
  
Lambda     K      H
   0.321    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,239,506
Number of Sequences: 5578
Number of extensions: 239418
Number of successful extensions: 1283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 689
length of query: 259
length of database: 26,017,032
effective HSP length: 104
effective length of query: 155
effective length of database: 25,436,920
effective search space: 3942722600
effective search space used: 3942722600
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)